[图书][B] Parametric statistical change point analysis

J Chen, AK Gupta, AK Gupta - 2000 - Springer
Recently there has been a keen interest in the statistical analysis of change point detec tion
and estimation. Mainly, it is because change point problems can be encountered in many …

Recent advances in array comparative genomic hybridization technologies and their applications in human genetics

WW Lockwood, R Chari, B Chi, WL Lam - European Journal of Human …, 2006 - nature.com
Array comparative genomic hybridization (array CGH) is a method used to detect segmental
DNA copy number alterations. Recently, advances in this technology have enabled high …

Personalised medicine for cancer: from drug development into clinical practice

KK Jain - Expert opinion on pharmacotherapy, 2005 - Taylor & Francis
Personalised management of cancer means the prescription of specific therapeutics that are
best suited for an individual patient and the type of tumour. Molecular diagnostics influences …

Spatial smoothing and hot spot detection for CGH data using the fused lasso

R Tibshirani, P Wang - Biostatistics, 2008 - academic.oup.com
We apply the “fused lasso” regression method of (TSRZ2004) to the problem of “hot-spot
detection”, in particular, detection of regions of gain or loss in comparative genomic …

The genomic landscape of compensatory evolution

B Szamecz, G Boross, D Kalapis, K Kovács… - PLoS …, 2014 - journals.plos.org
Adaptive evolution is generally assumed to progress through the accumulation of beneficial
mutations. However, as deleterious mutations are common in natural populations, they …

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data

WR Lai, MD Johnson, R Kucherlapati, PJ Park - Bioinformatics, 2005 - academic.oup.com
Abstract Motivation: Array Comparative Genomic Hybridization (CGH) can reveal
chromosomal aberrations in the genomic DNA. These amplifications and deletions at the …

A comparison study: applying segmentation to array CGH data for downstream analyses

H Willenbrock, J Fridlyand - Bioinformatics, 2005 - academic.oup.com
Motivation: Array comparative genomic hybridization (CGH) allows detection and mapping
of copy number of DNA segments. A challenge is to make inferences about the copy number …

The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome

A Sjödin, NR Street, G Sandberg, P Gustafsson… - New …, 2009 - Wiley Online Library
Populus has become an important model plant system. However, utilization of the
increasingly extensive collection of genetics and genomics data created by the community is …

Efficient change point detection for genomic sequences of continuous measurements

VMR Muggeo, G Adelfio - Bioinformatics, 2011 - academic.oup.com
Motivation: Knowing the exact locations of multiple change points in genomic sequences
serves several biological needs, for instance when data represent aCGH profiles and it is of …

A fast Bayesian change point analysis for the segmentation of microarray data

C Erdman, JW Emerson - Bioinformatics, 2008 - academic.oup.com
Motivation: The ability to detect regions of genetic alteration is of great importance in cancer
research. These alterations can take the form of large chromosomal gains and losses as …