Single-molecule experiments in biological physics: methods and applications

F Ritort - Journal of Physics: Condensed Matter, 2006 - iopscience.iop.org
I review single-molecule experiments (SMEs) in biological physics. Recent technological
developments have provided the tools to design and build scientific instruments of high …

Cellular strategies for regulating DNA supercoiling: a single-molecule perspective

DA Koster, A Crut, S Shuman, MA Bjornsti, NH Dekker - Cell, 2010 - cell.com
Entangling and twisting of cellular DNA (ie, supercoiling) are problems inherent to the
helical structure of double-stranded DNA. Supercoiling affects transcription, DNA replication …

Rad54 functions as a heteroduplex DNA pump modulated by its DNA substrates and Rad51 during D loop formation

WD Wright, WD Heyer - Molecular cell, 2014 - cell.com
The displacement loop (D loop) is the product of homology search and DNA strand invasion,
constituting a central intermediate in homologous recombination (HR). In eukaryotes, the …

Double-stranded DNA translocation: structure and mechanism of hexameric FtsK

TH Massey, CP Mercogliano, J Yates, DJ Sherratt… - Molecular cell, 2006 - cell.com
FtsK is a DNA translocase that coordinates chromosome segregation and cell division in
bacteria. In addition to its role as activator of XerCD site-specific recombination, FtsK can …

KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase

S Bigot, OA Saleh, C Lesterlin, C Pages… - The EMBO …, 2005 - embopress.org
Bacterial chromosomes are organized in replichores of opposite sequence polarity. This
conserved feature suggests a role in chromosome dynamics. Indeed, sequence polarity …

A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills

S Liu, G Chistol, CL Hetherington, S Tafoya… - Cell, 2014 - cell.com
Multimeric, ring-shaped molecular motors rely on the coordinated action of their subunits to
perform crucial biological functions. During these tasks, motors often change their operation …

Spintronic platforms for biomedical applications

PP Freitas, FA Cardoso, VC Martins, SAM Martins… - Lab on a Chip, 2012 - pubs.rsc.org
Since the fundamental discovery of the giant magnetoresistance many spintronic devices
have been developed and implemented in our daily life (eg information storage and …

Xer site specific recombination: double and single recombinase systems

F Castillo, A Benmohamed, G Szatmari - Frontiers in microbiology, 2017 - frontiersin.org
The separation and segregation of newly replicated bacterial chromosomes can be
constrained by the formation of circular chromosome dimers caused by crossing over during …

FtsK, a literate chromosome segregation machine

S Bigot, V Sivanathan, C Possoz… - Molecular …, 2007 - Wiley Online Library
The study of chromosome segregation in bacteria has gained strong insights from the use of
cytology techniques. A global view of chromosome choreography during the cell cycle is …

Direct observation of DNA distortion by the RSC complex

G Lia, E Praly, H Ferreira, C Stockdale, YC Tse-Dinh… - Molecular cell, 2006 - cell.com
The Snf2 family represents a functionally diverse class of ATPase sharing the ability to
modify DNA structure. Here, we use a magnetic trap and an atomic force microscope to …