Variant calling and benchmarking in an era of complete human genome sequences

ND Olson, J Wagner, N Dwarshuis, KH Miga… - Nature Reviews …, 2023 - nature.com
Genetic variant calling from DNA sequencing has enabled understanding of germline
variation in hundreds of thousands of humans. Sequencing technologies and variant-calling …

In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants

TV Nguyen, CJ Vander Jagt, J Wang… - Genetics Selection …, 2023 - Springer
Studies have demonstrated that structural variants (SV) play a substantial role in the
evolution of species and have an impact on Mendelian traits in the genome. However, unlike …

The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies

C Redin, H Brand, RL Collins, T Kammin, E Mitchell… - Nature …, 2017 - nature.com
Despite the clinical significance of balanced chromosomal abnormalities (BCAs), their
characterization has largely been restricted to cytogenetic resolution. We explored the …

Guiding the global evolution of cytogenetic testing for hematologic malignancies

YMN Akkari, LB Baughn, AM Dubuc… - Blood, The Journal …, 2022 - ashpublications.org
Cytogenetics has long represented a critical component in the clinical evaluation of
hematologic malignancies. Chromosome banding studies provide a simultaneous snapshot …

Diagnostic yield of whole genome sequencing after nondiagnostic exome sequencing or gene panel in developmental and epileptic encephalopathies

EE Palmer, R Sachdev, R Macintosh, US Melo… - Neurology, 2021 - AAN Enterprises
Objective To assess the benefits and limitations of whole genome sequencing (WGS)
compared to exome sequencing (ES) or multigene panel (MGP) in the molecular diagnosis …

Whole genome paired-end sequencing elucidates functional and phenotypic consequences of balanced chromosomal rearrangement in patients with developmental …

C Schluth-Bolard, F Diguet, N Chatron… - Journal of Medical …, 2019 - jmg.bmj.com
Background Balanced chromosomal rearrangements associated with abnormal phenotype
are rare events, but may be challenging for genetic counselling, since molecular …

[HTML][HTML] Points to consider in the detection of germline structural variants using next-generation sequencing: A statement of the American College of Medical Genetics …

G Raca, C Astbury, A Behlmann, MJ De Castro… - Genetics in …, 2023 - Elsevier
Disclaimer: This Points to Consider document is designed primarily as an educational
resource for clinical laboratory geneticists to help them provide quality clinical laboratory …

Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models

K Mohajeri, R Yadav, E D'haene, PM Boone… - The American Journal of …, 2022 - cell.com
Point mutations and structural variants that directly disrupt the coding sequence of MEF2C
have been associated with a spectrum of neurodevelopmental disorders (NDDs). However …

Reciprocal translocation carrier diagnosis in preimplantation human embryos

L Hu, D Cheng, F Gong, C Lu, Y Tan, K Luo, X Wu… - …, 2016 - thelancet.com
Preimplantation genetic diagnosis (PGD) is widely applied in reciprocal translocation
carriers to increase the chance for a successful live birth. However, reciprocal translocation …

ViVar: a comprehensive platform for the analysis and visualization of structural genomic variation

T Sante, S Vergult, PJ Volders, WP Kloosterman… - PloS one, 2014 - journals.plos.org
Structural genomic variations play an important role in human disease and phenotypic
diversity. With the rise of high-throughput sequencing tools, mate-pair/paired-end/single …