Parallel and convergent genomic changes underlie independent subterranean colonization across beetles

P Balart-García, L Aristide, TM Bradford… - Nature …, 2023 - nature.com
Adaptation to life in caves is often accompanied by dramatically convergent changes across
distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation …

The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution

K Eleftheriadi, N Guiglielmoni… - Peer Community …, 2024 - peercommunityjournal.org
Nematomorpha, also known as Gordiacea or Gordian worms, are a phylum of parasitic
organisms that belong to the Ecdysozoa, a clade of invertebrate animals characterized by …

[HTML][HTML] Highly dynamic evolution of the chemosensory system driven by gene gain and loss across subterranean beetles

P Balart-García, TM Bradford, PG Beasley-Hall… - Molecular Phylogenetics …, 2024 - Elsevier
Chemical cues in subterranean habitats differ highly from those on the surface due to the
contrasting environmental conditions, such as absolute darkness, high humidity or food …

Parallel duplication and loss of aquaporin‐coding genes during the “out of the sea” transition as potential key drivers of animal terrestrialization

GI Martínez‐Redondo, C Simón Guerrero… - Molecular …, 2023 - Wiley Online Library
One of the most important physiological challenges animals had to overcome during
terrestrialization (ie, the transition from sea to land) was water loss, which alters their osmotic …

Genomic Insights into Mollusk Terrestrialization: Parallel and Convergent Gene Family Expansions as Key Facilitators in Out-of-the-Sea Transitions

L Aristide, R Fernández - Genome Biology and Evolution, 2023 - academic.oup.com
Animals abandoned their marine niche and successfully adapted to life on land multiple
times throughout evolution, providing a rare opportunity to study the mechanisms driving …

MATEdb2, a collection of high-quality metazoan proteomes across the Animal Tree of Life to speed up phylogenomic studies

GI Martínez-Redondo, C Vargas-Chávez, K Eleftheriadi… - bioRxiv, 2024 - biorxiv.org
Recent advances in high throughput sequencing have exponentially increased the number
of genomic data available for animals (Metazoa) in the last decades, with high-quality …

PhyKIT: A Multitool for Phylogenomics

J Steenwyk, G Martínez-Redondo, T Buida… - 2024 - preprints.org
Multiple sequence alignments and phylogenetic trees are rich in biological information and
are fundamental to research in biology. PhyKIT is a tool for processing and analyzing the …

[HTML][HTML] Genomic innovation, convergence and parallelism facilitated the ecological transition to life out of the sea in molluscs

L Aristide, R Fernández - 2022 - europepmc.org
Animals abandoned their ancestral marine niche and ventured into land multiple times
across evolution, repeatedly overcoming major ecological challenges. These replicated …

Highly dynamic evolution of the chemosensory gene repertoire driven by gene gain and expansion across subterranean beetles

P Balart-García, TM Bradford, PG Beasley-Hall, S Polak… - bioRxiv, 2022 - biorxiv.org
Chemical cues in subterranean habitats differ highly from those on the surface due to the
contrasting environmental conditions, such as absolute darkness, high humidity or food …

Genomic exaptation and convergent evolution paved the way to independent subterranean colonization across beetle lineages

P Balart-García, L Aristide, T Bradford, P Beasley-Hall… - 2022 - researchsquare.com
Adaptation to life in caves is often accompanied by dramatically convergent changes across
distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation …