Ecological modelling approaches for predicting emergent properties in microbial communities
NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …
microbial communities and the ecosystems of which they are a part. Emergent properties …
Next generation sequencing approaches to evaluate water and wastewater quality
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …
address complex microbiological challenges in the water industry. NGS technologies can …
[HTML][HTML] Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
Abstract Microbes in Guaymas Basin (Gulf of California) hydrothermal sediments thrive on
hydrocarbons and sulfur and experience steep, fluctuating temperature and chemical …
hydrocarbons and sulfur and experience steep, fluctuating temperature and chemical …
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …
Adaptive genetic traits in pelagic freshwater microbes
MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …
Prospects for multi-omics in the microbial ecology of water engineering
Advances in high-throughput sequencing technologies and bioinformatics approaches over
almost the last three decades have substantially increased our ability to explore …
almost the last three decades have substantially increased our ability to explore …
[HTML][HTML] Using metabolic networks to resolve ecological properties of microbiomes
The systematic collection, integration and modelling of high-throughput molecular data
(multi-omics) allows the detailed characterisation of microbiomes in situ. Through metabolic …
(multi-omics) allows the detailed characterisation of microbiomes in situ. Through metabolic …
Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes
Microbes are critical in carbon and nutrient cycling in freshwater ecosystems. Members of
the Verrucomicrobia are ubiquitous in such systems, and yet their roles and ecophysiology …
the Verrucomicrobia are ubiquitous in such systems, and yet their roles and ecophysiology …
Heme auxotrophy in abundant aquatic microbial lineages
Heme, a porphyrin ring complexed with iron, is a metalloprosthetic group of numerous
proteins involved in diverse metabolic and respiratory processes across all domains of life …
proteins involved in diverse metabolic and respiratory processes across all domains of life …
TaxAss: leveraging a custom freshwater database achieves fine-scale taxonomic resolution
Taxonomy assignment of freshwater microbial communities is limited by the minimally
curated phylogenies used for large taxonomy databases. Here we introduce TaxAss, a …
curated phylogenies used for large taxonomy databases. Here we introduce TaxAss, a …