Long-range gene regulation in hormone-dependent cancer

TT Tettey, L Rinaldi, GL Hager - Nature Reviews Cancer, 2023 - nature.com
The human genome is organized into multiple structural layers, ranging from chromosome
territories to progressively smaller substructures, such as topologically associating domains …

Exploring the contribution of ARMS2 and HTRA1 genetic risk factors in age-related macular degeneration

Y Pan, Y Fu, PN Baird, RH Guymer, T Das… - Progress in Retinal and …, 2023 - Elsevier
Age-related macular degeneration (AMD) is the leading cause of severe irreversible central
vision loss in individuals over 65 years old. Genome-wide association studies (GWASs) …

Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer

SG Zhao, M Bootsma, S Zhou, R Shrestha… - Nature Genetics, 2024 - nature.com
The impact of variations in the three-dimensional structure of the genome has been
recognized, but solid cancer tissue studies are limited. Here, we performed integrated deep …

Constricted migration is associated with stable 3D genome structure differences in cancer cells

R Golloshi, C Playter, TF Freeman, P Das, TI Raines… - EMBO …, 2022 - embopress.org
To spread from a localized tumor, metastatic cancer cells must squeeze through
constrictions that cause major nuclear deformations. Since chromosome structure affects …

From omics to multi-omics approaches for in-depth analysis of the molecular mechanisms of prostate cancer

E Nevedomskaya, B Haendler - International Journal of Molecular …, 2022 - mdpi.com
Cancer arises following alterations at different cellular levels, including genetic and
epigenetic modifications, transcription and translation dysregulation, as well as metabolic …

Multilevel view on chromatin architecture alterations in cancer

M Gridina, V Fishman - Frontiers in Genetics, 2022 - frontiersin.org
Chromosomes inside the nucleus are not located in the form of linear molecules. Instead,
there is a complex multilevel genome folding that includes nucleosomes packaging …

Combined CRISPRi and proteomics screening reveal a cohesin-CTCF-bound allele contributing to increased expression of RUVBL1 and prostate cancer progression

Y Tian, D Dong, Z Wang, L Wu, JY Park, GH Wei… - The American Journal of …, 2023 - cell.com
Genome-wide association studies along with expression quantitative trait locus (eQTL)
mapping have identified hundreds of single-nucleotide polymorphisms (SNPs) and their …

Stiff extracellular matrix drives the differentiation of mesenchymal stem cells toward osteogenesis by the multiscale 3D genome reorganization

J Na, C Tai, Z Wang, Z Yang, X Chen, J Zhang… - Biomaterials, 2025 - Elsevier
Extracellular matrix (ECM) stiffness is a major driver of stem cell fate. However, the
involvement of the three-dimensional (3D) genomic reorganization in response to ECM …

Chromatin activation with H3K36me2 and compartment shift in metastatic castration-resistant prostate cancer

S Kanaoka, A Okabe, M Kanesaka, B Rahmutulla… - Cancer Letters, 2024 - Elsevier
Epigenetic modifiers are upregulated during the process of prostate cancer, acquiring
resistance to castration therapy and becoming lethal metastatic castration-resistant prostate …

Altered binding affinity of SIX1-Q177R correlates with enhanced WNT5A and WNT pathway effector expression in Wilms tumor

MJ Stevenson, SK Phanor, U Patel… - Disease Models & …, 2023 - journals.biologists.com
Wilms tumors present as an amalgam of varying proportions of tissues located within the
developing kidney, one being the nephrogenic blastema comprising multipotent nephron …