[HTML][HTML] Challenges in forecasting antimicrobial resistance

S Pei, S Blumberg, JC Vega, T Robin… - Emerging infectious …, 2023 - ncbi.nlm.nih.gov
Antimicrobial resistance is a major threat to human health. Since the 2000s, computational
tools for predicting infectious diseases have been greatly advanced; however, efforts to …

[HTML][HTML] Model diagnostics and forecast evaluation for quantiles

T Gneiting, D Wolffram, J Resin, K Kraus… - Annual Review of …, 2023 - annualreviews.org
Model diagnostics and forecast evaluation are closely related tasks, with the former
concerning in-sample goodness (or lack) of fit and the latter addressing predictive …

Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil

NR Faria, TA Mellan, C Whittaker, IM Claro… - Science, 2021 - science.org
Cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in
Manaus, Brazil, resurged in late 2020 despite previously high levels of infection. Genome …

Uncertainty as a form of transparency: Measuring, communicating, and using uncertainty

U Bhatt, J Antorán, Y Zhang, QV Liao… - Proceedings of the …, 2021 - dl.acm.org
Algorithmic transparency entails exposing system properties to various stakeholders for
purposes that include understanding, improving, and contesting predictions. Until now, most …

Predicting the mutational drivers of future SARS-CoV-2 variants of concern

MC Maher, I Bartha, S Weaver, J Di Iulio… - Science translational …, 2022 - science.org
SARS-CoV-2 evolution threatens vaccine-and natural infection–derived immunity and the
efficacy of therapeutic antibodies. To improve public health preparedness, we sought to …

[HTML][HTML] The united states covid-19 forecast hub dataset

EY Cramer, Y Huang, Y Wang, EL Ray, M Cornell… - Scientific data, 2022 - nature.com
Academic researchers, government agencies, industry groups, and individuals have
produced forecasts at an unprecedented scale during the COVID-19 pandemic. To leverage …

Causalgnn: Causal-based graph neural networks for spatio-temporal epidemic forecasting

L Wang, A Adiga, J Chen, A Sadilek… - Proceedings of the …, 2022 - ojs.aaai.org
Infectious disease forecasting has been a key focus in the recent past owing to the COVID-
19 pandemic and has proved to be an important tool in controlling the pandemic. With the …

[HTML][HTML] Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty

E Howerton, L Contamin, LC Mullany, M Qin… - Nature …, 2023 - nature.com
Our ability to forecast epidemics far into the future is constrained by the many complexities of
disease systems. Realistic longer-term projections may, however, be possible under well …

[HTML][HTML] Public mobility data enables COVID-19 forecasting and management at local and global scales

C Ilin, S Annan-Phan, XH Tai, S Mehra, S Hsiang… - Scientific reports, 2021 - nature.com
Policymakers everywhere are working to determine the set of restrictions that will effectively
contain the spread of COVID-19 without excessively stifling economic activity. We show that …

[HTML][HTML] COVID-19 vaccination awareness and aftermath: public sentiment analysis on Twitter data and vaccinated population prediction in the USA

NS Sattar, S Arifuzzaman - Applied Sciences, 2021 - mdpi.com
Social media, such as Twitter, is a source of exchanging information and opinion on global
issues such as COVID-19 pandemic. In this study, we work with a database of around 1.2 …