Gaussian process regression for materials and molecules

VL Deringer, AP Bartók, N Bernstein… - Chemical …, 2021 - ACS Publications
We provide an introduction to Gaussian process regression (GPR) machine-learning
methods in computational materials science and chemistry. The focus of the present review …

Integrating scientific knowledge with machine learning for engineering and environmental systems

J Willard, X Jia, S Xu, M Steinbach, V Kumar - ACM Computing Surveys, 2022 - dl.acm.org
There is a growing consensus that solutions to complex science and engineering problems
require novel methodologies that are able to integrate traditional physics-based modeling …

[PDF][PDF] Integrating physics-based modeling with machine learning: A survey

J Willard, X Jia, S Xu, M Steinbach… - arXiv preprint arXiv …, 2020 - beiyulincs.github.io
There is a growing consensus that solutions to complex science and engineering problems
require novel methodologies that are able to integrate traditional physics-based modeling …

Deep learning in protein structural modeling and design

W Gao, SP Mahajan, J Sulam, JJ Gray - Patterns, 2020 - cell.com
Deep learning is catalyzing a scientific revolution fueled by big data, accessible toolkits, and
powerful computational resources, impacting many fields, including protein structural …

86 PFLOPS deep potential molecular dynamics simulation of 100 million atoms with ab initio accuracy

D Lu, H Wang, M Chen, L Lin, R Car, E Weinan… - Computer Physics …, 2021 - Elsevier
We present the GPU version of DeePMD-kit, which, upon training a deep neural network
model using ab initio data, can drive extremely large-scale molecular dynamics (MD) …

A recipe for cracking the quantum scaling limit with machine learned electron densities

JA Rackers, L Tecot, M Geiger… - … Learning: Science and …, 2023 - iopscience.iop.org
A long-standing goal of science is to accurately simulate large molecular systems using
quantum mechanics. The poor scaling of current quantum chemistry algorithms on classical …

DeePKS: A comprehensive data-driven approach toward chemically accurate density functional theory

Y Chen, L Zhang, H Wang, WE - Journal of Chemical Theory and …, 2020 - ACS Publications
We propose a general machine learning-based framework for building an accurate and
widely applicable energy functional within the framework of generalized Kohn–Sham …

Integrating expert ODEs into neural ODEs: pharmacology and disease progression

Z Qian, W Zame, L Fleuren, P Elbers… - Advances in …, 2021 - proceedings.neurips.cc
Modeling a system's temporal behaviour in reaction to external stimuli is a fundamental
problem in many areas. Pure Machine Learning (ML) approaches often fail in the small …

Machine learning and physics: A survey of integrated models

A Seyyedi, M Bohlouli, SN Oskoee - ACM Computing Surveys, 2023 - dl.acm.org
Predictive modeling of various systems around the world is extremely essential from the
physics and engineering perspectives. The recognition of different systems and the capacity …

Deep-learning electronic-structure calculation of magnetic superstructures

H Li, Z Tang, X Gong, N Zou, W Duan… - Nature Computational …, 2023 - nature.com
Ab initio studies of magnetic superstructures are indispensable to research on emergent
quantum materials, but are currently bottlenecked by the formidable computational cost …