Bacteriophages in natural and artificial environments
S Batinovic, F Wassef, SA Knowler, DTF Rice… - Pathogens, 2019 - mdpi.com
Bacteriophages (phages) are biological entities that have attracted a great deal of attention
in recent years. They have been reported as the most abundant biological entities on the …
in recent years. They have been reported as the most abundant biological entities on the …
Viruses in soil ecosystems: an unknown quantity within an unexplored territory
KE Williamson, JJ Fuhrmann… - Annual review of …, 2017 - annualreviews.org
Viral abundance in soils can range from below detection limits in hot deserts to over 1 billion
per gram in wetlands. Abundance appears to be strongly influenced by water availability …
per gram in wetlands. Abundance appears to be strongly influenced by water availability …
INfrastructure for a PHAge REference database: identification of large-scale biases in the current collection of cultured phage genomes
Background: With advances in sequencing technology and decreasing costs, the number of
phage genomes that have been sequenced has increased markedly in the past decade …
phage genomes that have been sequenced has increased markedly in the past decade …
PhaTYP: predicting the lifestyle for bacteriophages using BERT
Bacteriophages (or phages), which infect bacteria, have two distinct lifestyles: virulent and
temperate. Predicting the lifestyle of phages helps decipher their interactions with their …
temperate. Predicting the lifestyle of phages helps decipher their interactions with their …
Bacteriophage evolution differs by host, lifestyle and genome
TN Mavrich, GF Hatfull - Nature Microbiology, 2017 - nature.com
Bacteriophages play key roles in microbial evolution 1, 2, marine nutrient cycling 3 and
human disease 4. Phages are genetically diverse, and their genome architectures are …
human disease 4. Phages are genetically diverse, and their genome architectures are …
Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters
Viruses play an important role in the ecology and biogeochemistry of marine ecosystems.
Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during …
Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during …
Bacteriophage classification for assembled contigs using graph convolutional network
Motivation Bacteriophages (aka phages), which mainly infect bacteria, play key roles in the
biology of microbes. As the most abundant biological entities on the planet, the number of …
biology of microbes. As the most abundant biological entities on the planet, the number of …
Phage therapy with a focus on the human microbiota
S Divya Ganeshan, Z Hosseinidoust - Antibiotics, 2019 - mdpi.com
Bacteriophages are viruses that infect bacteria. After their discovery in the early 1900s,
bacteriophages were a primary cure against infectious disease for almost 25 years, before …
bacteriophages were a primary cure against infectious disease for almost 25 years, before …
Underexplored viral auxiliary metabolic genes in soil: diversity and eco‐evolutionary significance
M Sun, S Yuan, R Xia, M Ye… - Environmental …, 2023 - Wiley Online Library
Bacterial viruses are the most abundant biological entities in soil ecosystems. Owing to the
advent of metagenomics and viromics approaches, an ever‐increasing diversity of virus …
advent of metagenomics and viromics approaches, an ever‐increasing diversity of virus …
Dead or alive: sediment DNA archives as tools for tracking aquatic evolution and adaptation
M Ellegaard, MRJ Clokie, T Czypionka… - Communications …, 2020 - nature.com
DNA can be preserved in marine and freshwater sediments both in bulk sediment and in
intact, viable resting stages. Here, we assess the potential for combined use of ancient …
intact, viable resting stages. Here, we assess the potential for combined use of ancient …