[HTML][HTML] Epigenetic drivers of tumourigenesis and cancer metastasis

A Chatterjee, EJ Rodger, MR Eccles - Seminars in cancer biology, 2018 - Elsevier
Since the completion of the first human genome sequence and the advent of next generation
sequencing technologies, remarkable progress has been made in understanding the …

Methods for analysis of specific DNA methylation status

MJ Pajares, C Palanca-Ballester, R Urtasun… - Methods, 2021 - Elsevier
Methylation of CpG dinucleotides plays a crucial role in the regulation of gene expression
and therefore in the development of different pathologies. Aberrant methylation has been …

[HTML][HTML] Marked global DNA hypomethylation is associated with constitutive PD-L1 expression in melanoma

A Chatterjee, EJ Rodger, A Ahn, PA Stockwell, M Parry… - Iscience, 2018 - cell.com
Constitutive expression of the immune checkpoint, PD-L1, inhibits anti-tumor immune
responses in cancer, although the factors involved in PD-L1 regulation are poorly …

Passing experiences on to future generations: endocrine disruptors and transgenerational inheritance of epimutations in brain and sperm

R Gillette, MJ Son, L Ton, AC Gore, D Crews - Epigenetics, 2018 - Taylor & Francis
All animals have body burdens of polychlorinated biphenyls (PCBs) despite their ban
decades ago. These and modern endocrine-disrupting chemicals (EDCs) such as the …

Dynamic epigenetic changes during a relapse and recovery cycle in myalgic encephalomyelitis/chronic fatigue syndrome

AM Helliwell, PA Stockwell, CD Edgar… - International Journal of …, 2022 - mdpi.com
Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) is a complex disease with
variable severity. Patients experience frequent relapses where symptoms increase in …

Comparison of global DNA methylation patterns in human melanoma tissues and their derivative cell lines

EJ Rodger, SN Almomani, JL Ludgate, PA Stockwell… - Cancers, 2021 - mdpi.com
Simple Summary Cancer cell lines are a defined population of cells, originally sourced from
tumour tissue, that can be maintained in culture for an extended period of time. They are a …

DNA Methylome and Transcriptome Maps of Primary Colorectal Cancer and Matched Liver Metastasis

P Ajithkumar, G Gimenez, PA Stockwell, S Almomani… - Data, 2023 - mdpi.com
Sequencing-based genome-wide DNA methylation, gene expression studies and
associated data on paired colorectal cancer (CRC) primary and liver metastasis are very …

A streamlined method for analysing genome-wide DNA methylation patterns from low amounts of FFPE DNA

JL Ludgate, J Wright, PA Stockwell, IM Morison… - BMC medical …, 2017 - Springer
Background Formalin fixed paraffin embedded (FFPE) tumor samples are a major source of
DNA from patients in cancer research. However, FFPE is a challenging material to work with …

Changes in DNA methylation profiles of myalgic encephalomyelitis/chronic fatigue syndrome patients reflect systemic dysfunctions

AM Helliwell, EC Sweetman, PA Stockwell… - Clinical …, 2020 - Springer
Abstract Background Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) is a
lifelong debilitating disease with a complex pathology not yet clearly defined. Susceptibility …

DMAP2: A Pipeline for Analysis of Whole‐Genome‐Scale DNA Methylation Sequencing Data

PA Stockwell, EJ Rodger, G Gimenez… - Current …, 2024 - Wiley Online Library
DNA methylation is well‐established as a major epigenetic mechanism that can control
gene expression and is involved in both normal development and disease. Analysis of high …