Genotyping-by-sequencing in plants

S Deschamps, V Llaca, GD May - Biology, 2012 - mdpi.com
The advent of next-generation DNA sequencing (NGS) technologies has led to the
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …

Large SNP arrays for genotyping in crop plants

MW Ganal, A Polley, EM Graner, J Plieske… - Journal of …, 2012 - Springer
Genotyping with large numbers of molecular markers is now an indispensable tool within
plant genetics and breeding. Especially through the identification of large numbers of single …

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

JA Poland, PJ Brown, ME Sorrells, JL Jannink - PloS one, 2012 - journals.plos.org
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …

Genotyping‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …

Application of genomic tools in plant breeding

A M. Perez-de-Castro, S Vilanova, J Cañizares… - Current …, 2012 - benthamdirect.com
Plant breeding has been very successful in developing improved varieties using
conventional tools and methodologies. Nowadays, the availability of genomic tools and …

Large‐scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi‐arid tropics of Asia and Africa

PJ Hiremath, A Farmer, SB Cannon… - Plant biotechnology …, 2011 - Wiley Online Library
Chickpea (Cicer arietinum L.) is an important legume crop in the semi‐arid regions of Asia
and Africa. Gains in crop productivity have been low however, particularly because of biotic …

Genome Wide Association Mapping of Sclerotinia sclerotiorum Resistance in Soybean with a Genotyping‐by‐Sequencing Approach

M Bastien, H Sonah, F Belzile - The Plant Genome, 2014 - Wiley Online Library
Sclerotinia stem rot (SSR) is one of the most important pests in cool soybean growing
regions of the Northeastern United States and Canada. However, the intensity of infestations …

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome …

FM You, N Huo, KR Deal, YQ Gu, MC Luo, PE McGuire… - BMC genomics, 2011 - Springer
Background Many plants have large and complex genomes with an abundance of repeated
sequences. Many plants are also polyploid. Both of these attributes typify the genome …

Translational genomics in agriculture: some examples in grain legumes

RK Varshney, H Kudapa, L Pazhamala… - Critical Reviews in …, 2015 - Taylor & Francis
Recent advances in genomics and associated disciplines like bioinformatics have made it
possible to develop genomic resources, such as large-scale sequence data for any crop …

De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to …

RS Sangwan, S Tripathi, J Singh, LK Narnoliya… - Gene, 2013 - Elsevier
Centella asiatica (L.) Urban is an important medicinal plant and has been used since
ancient times in traditional systems of medicine. C. asiatica mainly contains ursane skeleton …