Single-cell omics: A new direction for functional genetic research in human diseases and animal models
S Kong, R Li, Y Tian, Y Zhang, Y Lu, Q Ou, P Gao… - Frontiers in …, 2023 - frontiersin.org
Over the past decade, with the development of high-throughput single-cell sequencing
technology, single-cell omics has been emerged as a powerful tool to understand the …
technology, single-cell omics has been emerged as a powerful tool to understand the …
Multiscale 3D genome reorganization during skeletal muscle stem cell lineage progression and aging
Little is known about three-dimensional (3D) genome organization in skeletal muscle stem
cells [also called satellite cells (SCs)]. Here, we comprehensively map the 3D genome …
cells [also called satellite cells (SCs)]. Here, we comprehensively map the 3D genome …
'Enhancing'skeletal muscle and stem cells in three-dimensional: genome regulation of skeletal muscle in development and disease
Highlights•Enhancers integrate important developmental signals into transcriptional
outputs.•Enhancers are controlled in a three-dimensional architecture.•Three-dimensional …
outputs.•Enhancers are controlled in a three-dimensional architecture.•Three-dimensional …
Overlapping functions of SIX homeoproteins during embryonic myogenesis
M Wurmser, R Madani, N Chaverot, S Backer… - PLoS …, 2023 - journals.plos.org
Four SIX homeoproteins display a combinatorial expression throughout embryonic
developmental myogenesis and they modulate the expression of the myogenic regulatory …
developmental myogenesis and they modulate the expression of the myogenic regulatory …
[HTML][HTML] Integrating single-cell transcriptomes, chromatin accessibility, and multiomics analysis of mesoderm-induced embryonic stem cells
KD Ko, K Jiang, S Dell'Orso, V Sartorelli - STAR protocols, 2023 - Elsevier
Here, we present workflows for integrating independent transcriptomic and chromatin
accessibility datasets and analyzing multiomics. First, we describe steps for integrating …
accessibility datasets and analyzing multiomics. First, we describe steps for integrating …
Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis
Y Kuroki, K Agata - Genes to Cells, 2023 - Wiley Online Library
Preparing viable single cells is critical for conducting single‐cell RNA sequencing (scRNA‐
seq) because the presence of ambient RNA from dead or damaged cells can interfere with …
seq) because the presence of ambient RNA from dead or damaged cells can interfere with …
[HTML][HTML] 单细胞Hi-C 数据分析及应用研究进展
海燕龚, 付强麻, 晓彤张 - Sheng Wu Yi Xue Gong Cheng Xue Za …, 2023 - ncbi.nlm.nih.gov
染色质三维基因组结构在细胞功能和基因调控中起着关键作用。 单细胞Hi-C
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化 …
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化 …
3D organization of enhancers in MuSCs.
Skeletal muscle stem cells (MuSCs), also known as satellite cells, are essential for muscle
growth and injury induced regeneration. In healthy adult muscle, MuSCs remain in a …
growth and injury induced regeneration. In healthy adult muscle, MuSCs remain in a …
[HTML][HTML] Protocols to generate and isolate mouse myogenic progenitors both in vitro and in vivo
M Khateb, X Feng, S Dell'Orso, V Sartorelli - STAR protocols, 2023 - Elsevier
Mouse embryonic stem cells (mESCs) can be directed to acquire cell-lineage-specific
genetic programs and phenotypes by stepwise exposure to defined factors, allowing the …
genetic programs and phenotypes by stepwise exposure to defined factors, allowing the …
Advances in methods and applications of single-cell Hi-C data analysis
H Gong, F Ma, X Zhang - Sheng wu yi xue Gong Cheng xue za zhi …, 2023 - europepmc.org
染色质三维基因组结构在细胞功能和基因调控中起着关键作用. 单细胞 Hi-C
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化提供 …
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化提供 …