Single-cell omics: A new direction for functional genetic research in human diseases and animal models

S Kong, R Li, Y Tian, Y Zhang, Y Lu, Q Ou, P Gao… - Frontiers in …, 2023 - frontiersin.org
Over the past decade, with the development of high-throughput single-cell sequencing
technology, single-cell omics has been emerged as a powerful tool to understand the …

Multiscale 3D genome reorganization during skeletal muscle stem cell lineage progression and aging

Y Zhao, Y Ding, L He, Q Zhou, X Chen, Y Li… - Science …, 2023 - science.org
Little is known about three-dimensional (3D) genome organization in skeletal muscle stem
cells [also called satellite cells (SCs)]. Here, we comprehensively map the 3D genome …

'Enhancing'skeletal muscle and stem cells in three-dimensional: genome regulation of skeletal muscle in development and disease

MA Romero, AD Pyle - Current Opinion in Genetics & Development, 2023 - Elsevier
Highlights•Enhancers integrate important developmental signals into transcriptional
outputs.•Enhancers are controlled in a three-dimensional architecture.•Three-dimensional …

Overlapping functions of SIX homeoproteins during embryonic myogenesis

M Wurmser, R Madani, N Chaverot, S Backer… - PLoS …, 2023 - journals.plos.org
Four SIX homeoproteins display a combinatorial expression throughout embryonic
developmental myogenesis and they modulate the expression of the myogenic regulatory …

[HTML][HTML] Integrating single-cell transcriptomes, chromatin accessibility, and multiomics analysis of mesoderm-induced embryonic stem cells

KD Ko, K Jiang, S Dell'Orso, V Sartorelli - STAR protocols, 2023 - Elsevier
Here, we present workflows for integrating independent transcriptomic and chromatin
accessibility datasets and analyzing multiomics. First, we describe steps for integrating …

Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis

Y Kuroki, K Agata - Genes to Cells, 2023 - Wiley Online Library
Preparing viable single cells is critical for conducting single‐cell RNA sequencing (scRNA‐
seq) because the presence of ambient RNA from dead or damaged cells can interfere with …

[HTML][HTML] 单细胞Hi-C 数据分析及应用研究进展

海燕龚, 付强麻, 晓彤张 - Sheng Wu Yi Xue Gong Cheng Xue Za …, 2023 - ncbi.nlm.nih.gov
染色质三维基因组结构在细胞功能和基因调控中起着关键作用。 单细胞Hi-C
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化 …

3D organization of enhancers in MuSCs.

L He, H Sun, H Wang - Current Topics in Developmental Biology, 2024 - europepmc.org
Skeletal muscle stem cells (MuSCs), also known as satellite cells, are essential for muscle
growth and injury induced regeneration. In healthy adult muscle, MuSCs remain in a …

[HTML][HTML] Protocols to generate and isolate mouse myogenic progenitors both in vitro and in vivo

M Khateb, X Feng, S Dell'Orso, V Sartorelli - STAR protocols, 2023 - Elsevier
Mouse embryonic stem cells (mESCs) can be directed to acquire cell-lineage-specific
genetic programs and phenotypes by stepwise exposure to defined factors, allowing the …

Advances in methods and applications of single-cell Hi-C data analysis

H Gong, F Ma, X Zhang - Sheng wu yi xue Gong Cheng xue za zhi …, 2023 - europepmc.org
染色质三维基因组结构在细胞功能和基因调控中起着关键作用. 单细胞 Hi-C
技术可以在细胞水平上捕获基因组结构信息, 这为研究不同细胞类型之间基因组结构的变化提供 …