[PDF][PDF] Collaboro: a collaborative (meta) modeling tool

JLC Izquierdo, J Cabot - PeerJ Computer Science, 2016 - peerj.com
Motivation Scientists increasingly rely on intelligent information systems to help them in their
daily tasks, in particular for managing research objects, like publications or datasets. The …

Vascular peroxidase 1: a novel enzyme in promoting oxidative stress in cardiovascular system

QL Ma, GG Zhang, J Peng - Trends in cardiovascular medicine, 2013 - Elsevier
Vascular peroxidase 1 (VPO1) is a recently identified novel family member of peroxidases in
cardiovascular system. As an enzyme that is downstream of NADPH oxidases (NOX), VPO1 …

Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome

F Rubino, C Carberry, SM Waters, D Kenny… - The ISME …, 2017 - academic.oup.com
Many microbes in complex competitive environments share genes for acquiring and utilising
nutrients, questioning whether niche specialisation exists and if so, how it is maintained. We …

Expansion and evolution of thaumatin-like protein (TLP) gene family in six plants

J Cao, Y Lv, Z Hou, X Li, L Ding - Plant growth regulation, 2016 - Springer
Thaumatin-like protein (TLP) is one of pathogenesis-related protein family, which plays an
important role in plant defense system. While its origin and expansion is unknown in plants …

[HTML][HTML] Conserved cysteine residues provide a protein-protein interaction surface in dual oxidase (DUOX) proteins

JL Meitzler, S Hinde, B Bánfi, WM Nauseef… - Journal of Biological …, 2013 - ASBMB
Intramolecular disulfide bond formation is promoted in oxidizing extracellular and
endoplasmic reticulum compartments and often contributes to protein stability and function …

Evolution of the eyes of vipers with and without infrared-sensing pit organs

DJ Gower, FL Sampaio, L Peichl… - Biological Journal of …, 2019 - academic.oup.com
We examined lens and brille transmittance, photoreceptors, visual pigments, and visual
opsin gene sequences of viperid snakes with and without infrared-sensing pit organs …

[HTML][HTML] Molecular adaptation of telomere associated genes in mammals

CC Morgan, AM Mc Cartney, MTA Donoghue… - BMC Evolutionary …, 2013 - Springer
Background Placental mammals display a huge range of life history traits, including size,
longevity, metabolic rate and germ line generation time. Although a number of general …

Adaptive evolution as a predictor of species-specific innate immune response

AE Webb, ZN Gerek, CC Morgan… - Molecular biology …, 2015 - academic.oup.com
It has been proposed that positive selection may be associated with protein functional
change. For example, human and macaque have different outcomes to HIV infection and it …

[PDF][PDF] VESPA: very large-scale evolutionary and selective pressure analyses

AE Webb, TA Walsh, MJ O'Connell - PeerJ Computer Science, 2017 - peerj.com
Background Large-scale molecular evolutionary analyses of protein coding sequences
requires a number of preparatory inter-related steps from finding gene families, to …

[HTML][HTML] Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response

M Lynch, TA Walsh, I Marszalowska, AE Webb… - BMC evolutionary …, 2017 - Springer
Background Clostridium difficile is a nosocomial pathogen prevalent in hospitals worldwide
and increasingly common in the community. Sequence differences have been shown to be …