Anomalies in the transcriptional regulatory network of the yeast Saccharomyces cerevisiae

M Tuğrul, A Kabakçıoğlu - Journal of theoretical biology, 2010 - Elsevier
We investigate the structural and dynamical properties of the transcriptional regulatory
network of the Yeast Saccharomyces cerevisiae and compare it with two “unbiased” …

Content-based networks-From topology to dynamics

A Erzan, D Balcan - Nonlinear Phenomena in Complex Systems, 2007 - elibrary.ru
We outline the generic and rather universal scaling properties of content-based networks,
which were introduced as realisations of biological networks involving recognition and …

Motif statistics of artificially evolved and biological networks

B Danacı, MA Anıl, A Erzan - Physical Review E, 2014 - APS
Topological features of gene regulatory networks can be successfully reproduced by a
model population evolving under selection for short dynamical attractors. The evolved …

Robustness of transcriptional regulation in yeast-like model boolean networks

M Tuğrul, A Kabakçioğlu - International Journal of Bifurcation and …, 2010 - World Scientific
We investigate the dynamical properties of the transcriptional regulation of gene expression
in the yeast Saccharomyces Cerevisiae within the framework of a synchronously and …

Exploring the random genesis of co-occurrence networks

J Gustedt, HK Raghavan, P Schimit - Physica A: Statistical Mechanics and …, 2011 - Elsevier
Using the network random generation models from Gustedt (2009)[23], we simulate and
analyze several characteristics (such as the number of components, the degree distribution …

[PDF][PDF] İçerik-temelli Ağlarının Özellikleri

D Balcan - 2007 - core.ac.uk
Networks have become essential tools of researchers devoting themselves to the
understanding of complex systems. Ecosystems, the brain, metabolic pathways, regulatory …