[HTML][HTML] Quantum chemical package Jaguar: A survey of recent developments and unique features

Y Cao, T Balduf, MD Beachy, MC Bennett… - The Journal of …, 2024 - pubs.aip.org
This paper is dedicated to the quantum chemical package Jaguar, which is commercial
software developed and distributed by Schrödinger, Inc. We discuss Jaguar's scientific …

[HTML][HTML] Quantum mechanical-based strategies in drug discovery: Finding the pace to new challenges in drug design

T Ginex, J Vázquez, C Estarellas, FJ Luque - Current Opinion in Structural …, 2024 - Elsevier
The expansion of the chemical space to tangible libraries containing billions of
synthesizable molecules opens exciting opportunities for drug discovery, but also …

Reparameterization of GFN1-xTB for atmospheric molecular clusters: applications to multi-acid–multi-base systems

Y Knattrup, J Kubečka, H Wu, F Jensen, J Elm - RSC Advances, 2024 - pubs.rsc.org
Atmospheric molecular clusters, the onset of secondary aerosol formation, are a major part
of the current uncertainty in modern climate models. Quantum chemical (QC) methods are …

Multilevel Framework for Analysis of Protein Folding Involving Disulfide Bond Formation

PA Wesołowski, DJ Wales, P Pracht - The Journal of Physical …, 2024 - ACS Publications
In this study, a three-layered multicenter ONIOM approach is implemented to characterize
the naive folding pathway of bovine pancreatic trypsin inhibitor (BPTI). Each layer represents …

Overcoming the Pitfalls of Computing Reaction Selectivity from Ensembles of Transition States

R Laplaza, MD Wodrich… - The Journal of Physical …, 2024 - ACS Publications
The prediction of reaction selectivity is a challenging task for computational chemistry, not
only because many molecules adopt multiple conformations but also due to the exponential …

Emerging Conformational-Analysis Protocols from the RTCONF55-16K Reaction Thermochemistry Conformational Benchmark Set

BB Mészáros, K Kubicskó, DD Németh… - Journal of Chemical …, 2024 - ACS Publications
RTCONF55-16K is a new, reactive conformational data set based on cost-efficient methods
to assess different conformational analysis protocols. Our reference calculations …

Extension of the D3 and D4 London dispersion corrections to the full actinides series

L Wittmann, I Gordiy, M Friede… - Physical Chemistry …, 2024 - pubs.rsc.org
Efficient dispersion corrections are an indispensable component of modern density
functional theory, semi-empirical quantum mechanical, and even force-field methods. In this …

Modelling ligand exchange in metal complexes with machine learning potentials

V Juraskova, G Tusha, H Zhang, LV Schäfer… - Faraday …, 2024 - pubs.rsc.org
Metal ions are irreplaceable in many areas of chemistry, including (bio) catalysis, self-
assembly and charge transfer processes. Yet, modelling their structural and dynamic …

Can H2 be Superacidic? A Computational Study of Triel-Bonded Brønsted Acids

J Brzeski - The Journal of Physical Chemistry A, 2024 - ACS Publications
The abundance of XIII group element compounds in science and industry together with their
electron-deficient character gives rise to their influence on properties of the systems they …

Elucidating the non-covalent interactions in the thiazole-carbon dioxide complexes through rotational spectroscopy and theoretical computations

L Wang, T Yang, Z Wang, G Feng - Physical Chemistry Chemical …, 2024 - pubs.rsc.org
The complexes formed between thiazole and carbon dioxide were studied to probe the non-
covalent bonding properties between carbon dioxide and heteroaromatic ring. The rotational …