Mass spectrometry approaches to glycomic and glycoproteomic analyses

LR Ruhaak, G Xu, Q Li, E Goonatilleke… - Chemical …, 2018 - ACS Publications
Glycomic and glycoproteomic analyses involve the characterization of oligosaccharides
(glycans) conjugated to proteins. Glycans are produced through a complicated nontemplate …

Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Oligosaccharide analysis by mass spectrometry: a review of recent developments

MJ Kailemia, LR Ruhaak, CB Lebrilla… - Analytical …, 2014 - ACS Publications
Carbohydrates are central players in a number of important biological processes including
cell signaling, cell adhesion, and the regulation of biochemical pathways. Unlike nucleic …

High-sensitivity analytical approaches for the structural characterization of glycoproteins

WR Alley Jr, BF Mann, MV Novotny - Chemical reviews, 2013 - ACS Publications
1.1. General Considerations Structural intricacies of carbohydrate molecules and their
propensity to form varied linkages, substitutions, and branching patterns have fascinated …

Annotation and structural elucidation of bovine milk oligosaccharides and determination of novel fucosylated structures

DL Aldredge, MR Geronimo, S Hua, CC Nwosu… - …, 2013 - academic.oup.com
Bovine milk oligosaccharides (BMOs) are recognized by the dairy and food industries, as
well as by infant formula manufacturers, as novel, high-potential bioactive food ingredients …

High resolution mass spectrometry based techniques at the crossroads of metabolic pathways

C Junot, F Fenaille, B Colsch… - Mass spectrometry …, 2014 - Wiley Online Library
The metabolome is the set of small molecular mass compounds found in biological media,
and metabolomics, which refers to as the analysis of metabolome in a given biological …

Comprehensive structural glycomic characterization of the glycocalyxes of cells and tissues

Q Li, Y Xie, M Wong, M Barboza, CB Lebrilla - Nature Protocols, 2020 - nature.com
The glycocalyx comprises glycosylated proteins and lipids and fcorms the outermost layer of
cells. It is involved in fundamental inter-and intracellular processes, including non-self-cell …

Building a PGC-LC-MS N-glycan retention library and elution mapping resource

JL Abrahams, MP Campbell, NH Packer - Glycoconjugate journal, 2018 - Springer
Porous graphitised carbon-liquid chromatography (PGC-LC) has been proven to be a
powerful technique for the analysis and characterisation of complex mixtures of isomeric and …

Glycosylation characteristics of colorectal cancer

S Holst, M Wuhrer, Y Rombouts - Advances in cancer research, 2015 - Elsevier
Glycans on proteins and lipids are known to alter with malignant transformation. The study of
these may contribute to the discovery of biomarkers and treatment targets as well as …

GPQuest: a spectral library matching algorithm for site-specific assignment of tandem mass spectra to intact N-glycopeptides

S Toghi Eshghi, P Shah, W Yang, X Li… - Analytical …, 2015 - ACS Publications
Glycoprotein changes occur in not only protein abundance but also the occupancy of each
glycosylation site by different glycoforms during biological or pathological processes. Recent …