Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

The population genetics of commensal Escherichia coli

O Tenaillon, D Skurnik, B Picard… - Nature reviews …, 2010 - nature.com
The primary habitat of Escherichia coli is the vertebrate gut, where it is the predominant
aerobic organism, living in symbiosis with its host. Despite the occurrence of recombination …

[图书][B] Species concepts in biology

FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …

The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations

JH Rotthauwe, KP Witzel, W Liesack - Applied and environmental …, 1997 - Am Soc Microbiol
The naturally occurring genetic heterogeneity of autotrophic ammonia-oxidizing populations
belonging to the beta subclass of the Proteobacteria was studied by using a newly …

Phylogenetic species recognition and species concepts in fungi

JW Taylor, DJ Jacobson, S Kroken, T Kasuga… - Fungal genetics and …, 2000 - Elsevier
Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and
Biology 31, 000–000. The operational species concept, ie, the one used to recognize …

Video ergo sum: manipulating bodily self-consciousness

B Lenggenhager, T Tadi, T Metzinger, O Blanke - Science, 2007 - science.org
Humans normally experience the conscious self as localized within their bodily borders. This
spatial unity may break down in certain neurological conditions such as out-of-body …

Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements

S Humphrey, A Fillol-Salom, N Quiles-Puchalt… - Nature …, 2021 - nature.com
It is commonly assumed that the horizontal transfer of most bacterial chromosomal genes is
limited, in contrast to the frequent transfer observed for typical mobile genetic elements …

Population genomics of early events in the ecological differentiation of bacteria

BJ Shapiro, J Friedman, OX Cordero, SP Preheim… - science, 2012 - science.org
Genetic exchange is common among bacteria, but its effect on population diversity during
ecological differentiation remains controversial. A fundamental question is whether …

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

E Stackebrandt, W Frederiksen… - … of systematic and …, 2002 - microbiologyresearch.org
An ad hoc committee for the re-evaluation of the species definition in bacteriology met in
Gent, Belgium, in February 2002. The committee made various recommendations regarding …

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

JW Sahl, D Lemmer, J Travis, JM Schupp… - Microbial …, 2016 - microbiologyresearch.org
Whole-genome sequencing (WGS) of bacterial isolates has become standard practice in
many laboratories. Applications for WGS analysis include phylogeography and molecular …