Basic concepts of microarrays and potential applications in clinical microbiology

MB Miller, YW Tang - Clinical microbiology reviews, 2009 - Am Soc Microbiol
The introduction of in vitro nucleic acid amplification techniques, led by real-time PCR, into
the clinical microbiology laboratory has transformed the laboratory detection of viruses and …

High-throughput SNP genotyping on universal bead arrays

R Shen, JB Fan, D Campbell, W Chang, J Chen… - Mutation Research …, 2005 - Elsevier
We have developed a flexible, accurate and highly multiplexed SNP genotyping assay for
high-throughput genetic analysis of large populations on a bead array platform. The novel …

Integrative transcriptome analysis reveals common molecular subclasses of human hepatocellular carcinoma

Y Hoshida, SMB Nijman, M Kobayashi, JA Chan… - Cancer research, 2009 - AACR
Hepatocellular carcinoma (HCC) is a highly heterogeneous disease, and prior attempts to
develop genomic-based classification for HCC have yielded highly divergent results …

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

J Dostie, TA Richmond, RA Arnaout, RR Selzer… - Genome …, 2006 - genome.cshlp.org
Physical interactions between genetic elements located throughout the genome play
important roles in gene regulation and can be identified with the Chromosome Conformation …

Gene expression in fixed tissues and outcome in hepatocellular carcinoma

Y Hoshida, A Villanueva, M Kobayashi… - … England Journal of …, 2008 - Mass Medical Soc
Background It is a challenge to identify patients who, after undergoing potentially curative
treatment for hepatocellular carcinoma, are at greatest risk for recurrence. Such high-risk …

[HTML][HTML] MED12 controls the response to multiple cancer drugs through regulation of TGF-β receptor signaling

S Huang, M Hölzel, T Knijnenburg, A Schlicker… - Cell, 2012 - cell.com
Inhibitors of the ALK and EGF receptor tyrosine kinases provoke dramatic but short-lived
responses in lung cancers harboring EML4-ALK translocations or activating mutations of …

Root attributes affecting water uptake of rice (Oryza sativa) under drought

A Henry, AJ Cal, TC Batoto, RO Torres… - … of experimental botany, 2012 - academic.oup.com
Lowland rice roots have a unique physiological response to drought because of their
adaptation to flooded soil. Rice root attributes that facilitate growth under flooded conditions …

Wnt signaling in triple negative breast cancer is associated with metastasis

N Dey, BG Barwick, CS Moreno, M Ordanic-Kodani… - BMC cancer, 2013 - Springer
Abstract Background Triple Negative subset of (TN) Breast Cancers (BC), a close associate
of the basal-like subtype (with limited discordance) is an aggressive form of the disease …

MicroRNA miR-183 Functions as an Oncogene by Targeting the Transcription Factor EGR1 and Promoting Tumor Cell Migration

AL Sarver, L Li, S Subramanian - Cancer research, 2010 - AACR
The transcription factor EGR1 is a tumor suppressor gene that is downregulated in many
cancer types. Clinically, loss of EGR1 translates to increased tumor transformation and …

Preclinical model of organotypic culture for pharmacodynamic profiling of human tumors

V Vaira, G Fedele, S Pyne, E Fasoli… - Proceedings of the …, 2010 - National Acad Sciences
Predicting drug response in cancer patients remains a major challenge in the clinic. We
have perfected an ex vivo, reproducible, rapid and personalized culture method to …