Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

Classification of intrinsically disordered regions and proteins

R Van Der Lee, M Buljan, B Lang, RJ Weatheritt… - Chemical …, 2014 - ACS Publications
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …

Intrinsically disordered proteins and intrinsically disordered protein regions

CJ Oldfield, AK Dunker - Annual review of biochemistry, 2014 - annualreviews.org
Intrinsically disordered proteins (IDPs) and IDP regions fail to form a stable structure, yet
they exhibit biological activities. Their mobile flexibility and structural instability are encoded …

Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues

RK Das, RV Pappu - … of the National Academy of Sciences, 2013 - National Acad Sciences
The functions of intrinsically disordered proteins (IDPs) are governed by relationships
between information encoded in their amino acid sequences and the ensembles of …

The role of protein loops and linkers in conformational dynamics and allostery

E Papaleo, G Saladino, M Lambrughi… - Chemical …, 2016 - ACS Publications
Proteins are dynamic entities that undergo a plethora of conformational changes that may
take place on a wide range of time scales. These changes can be as small as the rotation of …

Principles governing the phase separation of multidomain proteins

P Mohanty, U Kapoor… - Biochemistry, 2022 - ACS Publications
A variety of membraneless organelles, often termed “biological condensates”, play an
important role in the regulation of cellular processes such as gene transcription, translation …

[HTML][HTML] Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

A Castello, B Fischer, K Eichelbaum, R Horos… - Cell, 2012 - cell.com
RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two
complementary protocols for covalent UV crosslinking of RBPs to RNA, we describe a …

Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

M Buljan, G Chalancon, S Eustermann, GP Wagner… - Molecular cell, 2012 - cell.com
Alternative inclusion of exons increases the functional diversity of proteins. Among
alternatively spliced exons, tissue-specific exons play a critical role in maintaining tissue …

The new (dis) order in RNA regulation

AI Järvelin, M Noerenberg, I Davis… - Cell Communication and …, 2016 - Springer
RNA-binding proteins play a key role in the regulation of all aspects of RNA metabolism,
from the synthesis of RNA to its decay. Protein-RNA interactions have been thought to be …

Structural mechanisms of nucleosome recognition by linker histones

BR Zhou, J Jiang, H Feng, R Ghirlando, TS Xiao, Y Bai - Molecular cell, 2015 - cell.com
Linker histones bind to the nucleosome and regulate the structure of chromatin and gene
expression. Despite more than three decades of effort, the structural basis of nucleosome …