Plant genome resequencing and population genomics: Current status and future prospects

B Song, W Ning, D Wei, M Jiang, K Zhu, X Wang… - Molecular Plant, 2023 - cell.com
Advances in DNA sequencing technology have sparked a genomics revolution, driving
breakthroughs in plant genetics and crop breeding. Recently, the focus has shifted from …

[HTML][HTML] Crop germplasm: Current challenges, physiological-molecular perspective, and advance strategies towards development of climate-resilient crops

R Mondal, A Kumar, BN Gnanesh - Heliyon, 2023 - cell.com
Germplasm is a long-term resource management mission and investment for civilization. An
estimated∼ 7.4 million accessions are held in 1750 plant germplasm centres around the …

High-through counting of Chinese cabbage trichomes based on deep learning and trinocular stereo microscope

X Li, J Chen, Y He, G Yang, Z Li, Y Tao, Y Li, Y Li… - … and Electronics in …, 2023 - Elsevier
The trichome trait is one of the important phenotypes for variety classification and breeding
improvement of Chinese cabbage (Brassica campestris L. syn. B. rapa). However, obtaining …

[HTML][HTML] Genomic prediction for agronomic traits in a diverse Flax (Linum usitatissimum L.) germplasm collection

A Hoque, JV Anderson, M Rahman - Scientific Reports, 2024 - nature.com
Breeding programs require exhaustive phenotyping of germplasms, which is time-
demanding and expensive. Genomic prediction helps breeders harness the diversity of any …

[HTML][HTML] Genomic insights into oxalate content in spinach: A genome-wide association study and genomic prediction approach

H Xiong, K Chiwina, W Ravelombola, Y Chen… - Horticultural Plant …, 2024 - Elsevier
Oxalate content in spinach is a key trait of interest due to its relevance to human health.
Understanding the genetic basis of it can facilitate the development of spinach varieties with …

[HTML][HTML] Genome-wide association study and genomic prediction of Fusarium wilt resistance in common bean core collection

K Chiwina, H Xiong, G Bhattarai, RW Dickson… - International Journal of …, 2023 - mdpi.com
The common bean (Phaseolus vulgaris L.) is a globally cultivated leguminous crop.
Fusarium wilt (FW), caused by Fusarium oxysporum f. sp. phaseoli (Fop), is a significant …

GWAS and genomic selection for marker-assisted development of sucrose enriched soybean cultivars

A Riaz, Q Raza, A Kumar, D Dean, K Chiwina, TM Phiri… - Euphytica, 2023 - Springer
Sucrose concentration in soy-derived foods is becoming a seminal trait for the production of
food-grade soybeans. However, limited scientific knowledge is reported on this increasingly …

Unraveling genetic mysteries: A comprehensive review of GWAS and DNA insights in animal and plant pathosystems

N Liu, M Guan, B Ma, H Chu, G Tian, Y Zhang… - International Journal of …, 2024 - Elsevier
DNA serves as the carrier of genetic information, with sequence variations playing a pivotal
role in defining hereditary traits. Genome-Wide Association Studies (GWAS) facilitate the …

[HTML][HTML] Mapping and selection of downy mildew resistance in spinach cv. whale by low coverage whole genome sequencing

G Bhattarai, D Olaoye, B Mou, JC Correll… - Frontiers in Plant …, 2022 - frontiersin.org
Spinach (Spinacia oleracea) is a popular leafy vegetable crop and commercial production is
centered in California and Arizona in the US. The oomycete Peronospora effusa causes the …

[HTML][HTML] Combining GS-assisted GWAS and transcriptome analysis to mine candidate genes for nitrogen utilization efficiency in Populus cathayana

X Zhou, X Xiang, M Zhang, D Cao, C Du, L Zhang… - BMC Plant …, 2023 - Springer
Background Forest trees such as poplar, shrub willow, et al. are essential natural resources
for sustainable and renewable energy production, and their wood can reduce dependence …