Closed-loop and activity-guided optogenetic control

L Grosenick, JH Marshel, K Deisseroth - Neuron, 2015 - cell.com
Advances in optical manipulation and observation of neural activity have set the stage for
widespread implementation of closed-loop and activity-guided optical control of neural …

Structure learning in graphical modeling

M Drton, MH Maathuis - Annual Review of Statistics and Its …, 2017 - annualreviews.org
A graphical model is a statistical model that is associated with a graph whose nodes
correspond to variables of interest. The edges of the graph reflect allowed conditional …

The Gaussian graphical model in cross-sectional and time-series data

S Epskamp, LJ Waldorp, R Mõttus… - Multivariate behavioral …, 2018 - Taylor & Francis
We discuss the Gaussian graphical model (GGM; an undirected network of partial
correlation coefficients) and detail its utility as an exploratory data analysis tool. The GGM …

The joint graphical lasso for inverse covariance estimation across multiple classes

P Danaher, P Wang, DM Witten - Journal of the Royal Statistical …, 2014 - academic.oup.com
We consider the problem of estimating multiple related Gaussian graphical models from a
high dimensional data set with observations belonging to distinct classes. We propose the …

[PDF][PDF] What regularized auto-encoders learn from the data-generating distribution

G Alain, Y Bengio - The Journal of Machine Learning Research, 2014 - jmlr.org
What do auto-encoders learn about the underlying data-generating distribution? Recent
work suggests that some auto-encoder variants do a good job of capturing the local manifold …

Strong rules for discarding predictors in lasso-type problems

R Tibshirani, J Bien, J Friedman, T Hastie… - Journal of the Royal …, 2012 - academic.oup.com
We consider rules for discarding predictors in lasso regression and related problems, for
computational efficiency. El Ghaoui and his colleagues have proposed 'SAFE'rules, based …

[PDF][PDF] The huge package for high-dimensional undirected graph estimation in R

T Zhao, H Liu, K Roeder, J Lafferty… - The Journal of Machine …, 2012 - jmlr.org
We describe an R package named huge which provides easy-to-use functions for estimating
high dimensional undirected graphs from data. This package implements recent results in …

Sparse inverse covariance matrix estimation using quadratic approximation

CJ Hsieh, I Dhillon, P Ravikumar… - Advances in neural …, 2011 - proceedings.neurips.cc
The L_1 regularized Gaussian maximum likelihood estimator has been shown to have
strong statistical guarantees in recovering a sparse inverse covariance matrix, or …

Estimating structured high-dimensional covariance and precision matrices: Optimal rates and adaptive estimation

TT Cai, Z Ren, HH Zhou - 2016 - projecteuclid.org
This is an expository paper that reviews recent developments on optimal estimation of
structured high-dimensional covariance and precision matrices. Minimax rates of …

[PDF][PDF] QUIC: quadratic approximation for sparse inverse covariance estimation.

CJ Hsieh, MA Sustik, IS Dhillon, P Ravikumar - J. Mach. Learn. Res., 2014 - jmlr.org
The l1-regularized Gaussian maximum likelihood estimator (MLE) has been shown to have
strong statistical guarantees in recovering a sparse inverse covariance matrix, or …