Challenges in neoantigen-directed therapeutics
L Lybaert, S Lefever, B Fant, E Smits, B De Geest… - Cancer Cell, 2023 - cell.com
A fundamental prerequisite for the efficacy of cancer immunotherapy is the presence of
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …
Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence
Y Xu, GH Su, D Ma, Y Xiao, ZM Shao… - Signal Transduction and …, 2021 - nature.com
Immunotherapies play critical roles in cancer treatment. However, given that only a few
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
Peptide-binding proteins play key roles in biology, and predicting their binding specificity is
a long-standing challenge. While considerable protein structural information is available, the …
a long-standing challenge. While considerable protein structural information is available, the …
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction
Abstract Human Leukocyte Antigen (HLA) is a type of molecule residing on the surfaces of
most human cells and exerts an essential role in the immune system responding to the …
most human cells and exerts an essential role in the immune system responding to the …
BERTMHC: improved MHC–peptide class II interaction prediction with transformer and multiple instance learning
J Cheng, K Bendjama, K Rittner, B Malone - Bioinformatics, 2021 - academic.oup.com
Motivation Increasingly comprehensive characterization of cancer-associated genetic
alterations has paved the way for the development of highly specific therapeutic vaccines …
alterations has paved the way for the development of highly specific therapeutic vaccines …
[HTML][HTML] Protein scaffolds in human clinics
Fundamental clinical areas such as drug delivery and regenerative medicine require
biocompatible materials as mechanically stable scaffolds or as nanoscale drug carriers …
biocompatible materials as mechanically stable scaffolds or as nanoscale drug carriers …
A comprehensive assessment and comparison of tools for HLA class I peptide-binding prediction
Human leukocyte antigen class I (HLA-I) molecules bind intracellular peptides produced by
protein hydrolysis and present them to the T cells for immune recognition and response …
protein hydrolysis and present them to the T cells for immune recognition and response …
Bioactive Molecules from the Innate Immunity of Ascidians and Innovative Methods of Drug Discovery: A Computational Approach Based on Artificial Intelligence
The study of bioactive molecules of marine origin has created an important bridge between
biological knowledge and its applications in biotechnology and biomedicine. Current studies …
biological knowledge and its applications in biotechnology and biomedicine. Current studies …
DeepMHCII: a novel binding core-aware deep interaction model for accurate MHC-II peptide binding affinity prediction
Motivation Computationally predicting major histocompatibility complex (MHC)-peptide
binding affinity is an important problem in immunological bioinformatics. Recent cutting …
binding affinity is an important problem in immunological bioinformatics. Recent cutting …
Structure modeling and specificity of peptide-MHC class I interactions using geometric deep learning
A Aronson, T Hochner, T Cohen… - bioRxiv, 2022 - biorxiv.org
Abstract Major Histocompatibility Complex (MHC) plays a major role in the adaptive immune
response by recognizing foreign proteins through binding to their peptides. In humans alone …
response by recognizing foreign proteins through binding to their peptides. In humans alone …