[HTML][HTML] The genetics of transcription factor DNA binding variation

B Deplancke, D Alpern, V Gardeux - Cell, 2016 - cell.com
Most complex trait-associated variants are located in non-coding regulatory regions of the
genome, where they have been shown to disrupt transcription factor (TF)-DNA binding …

The Drosophila model for microbiome research

AE Douglas - Lab animal, 2018 - nature.com
The gut microbiome is increasingly recognized to play an important role in shaping the
health and fitness of animals, including humans. Drosophila is emerging as a valuable …

Pangenome graph construction from genome alignments with Minigraph-Cactus

G Hickey, J Monlong, J Ebler, AM Novak… - Nature …, 2024 - nature.com
Pangenome references address biases of reference genomes by storing a representative
set of diverse haplotypes and their alignment, usually as a graph. Alternate alleles …

FlyBase: updates to the Drosophila melanogaster knowledge base

A Larkin, SJ Marygold, G Antonazzo… - Nucleic acids …, 2021 - academic.oup.com
FlyBase (flybase. org) is an essential online database for researchers using Drosophila
melanogaster as a model organism, facilitating access to a diverse array of information that …

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales… - Nature …, 2019 - nature.com
Chromatin topology is intricately linked to gene expression, yet its functional requirement
remains unclear. Here, we comprehensively assessed the interplay between genome …

[HTML][HTML] Transcriptional programs of circuit assembly in the Drosophila visual system

YZ Kurmangaliyev, J Yoo, J Valdes-Aleman… - Neuron, 2020 - cell.com
Precise patterns of synaptic connections between neurons are encoded in their genetic
programs. Here, we use single-cell RNA sequencing to profile neuronal transcriptomes at …

Genetics on the Fly: A Primer on the Drosophila Model System

KG Hales, CA Korey, AM Larracuente, DM Roberts - Genetics, 2015 - academic.oup.com
Fruit flies of the genus Drosophila have been an attractive and effective genetic model
organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them …

CeNDR, the Caenorhabditis elegans natural diversity resource

DE Cook, S Zdraljevic, JP Roberts… - Nucleic acids …, 2017 - academic.oup.com
Studies in model organisms have yielded considerable insights into the etiology of disease
and our understanding of evolutionary processes. Caenorhabditis elegans is among the …

[HTML][HTML] Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila

GE Rech, S Radío, S Guirao-Rico, L Aguilera… - Nature …, 2022 - nature.com
High quality reference genomes are crucial to understanding genome function, structure and
evolution. The availability of reference genomes has allowed us to start inferring the role of …

[HTML][HTML] Shadow enhancers are pervasive features of developmental regulatory networks

E Cannavò, P Khoueiry, DA Garfield, P Geeleher… - Current Biology, 2016 - cell.com
Embryogenesis is remarkably robust to segregating mutations and environmental variation;
under a range of conditions, embryos of a given species develop into stereotypically …