[HTML][HTML] The genetics of transcription factor DNA binding variation
Most complex trait-associated variants are located in non-coding regulatory regions of the
genome, where they have been shown to disrupt transcription factor (TF)-DNA binding …
genome, where they have been shown to disrupt transcription factor (TF)-DNA binding …
The Drosophila model for microbiome research
AE Douglas - Lab animal, 2018 - nature.com
The gut microbiome is increasingly recognized to play an important role in shaping the
health and fitness of animals, including humans. Drosophila is emerging as a valuable …
health and fitness of animals, including humans. Drosophila is emerging as a valuable …
Pangenome graph construction from genome alignments with Minigraph-Cactus
Pangenome references address biases of reference genomes by storing a representative
set of diverse haplotypes and their alignment, usually as a graph. Alternate alleles …
set of diverse haplotypes and their alignment, usually as a graph. Alternate alleles …
FlyBase: updates to the Drosophila melanogaster knowledge base
A Larkin, SJ Marygold, G Antonazzo… - Nucleic acids …, 2021 - academic.oup.com
FlyBase (flybase. org) is an essential online database for researchers using Drosophila
melanogaster as a model organism, facilitating access to a diverse array of information that …
melanogaster as a model organism, facilitating access to a diverse array of information that …
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales… - Nature …, 2019 - nature.com
Chromatin topology is intricately linked to gene expression, yet its functional requirement
remains unclear. Here, we comprehensively assessed the interplay between genome …
remains unclear. Here, we comprehensively assessed the interplay between genome …
[HTML][HTML] Transcriptional programs of circuit assembly in the Drosophila visual system
Precise patterns of synaptic connections between neurons are encoded in their genetic
programs. Here, we use single-cell RNA sequencing to profile neuronal transcriptomes at …
programs. Here, we use single-cell RNA sequencing to profile neuronal transcriptomes at …
Genetics on the Fly: A Primer on the Drosophila Model System
KG Hales, CA Korey, AM Larracuente, DM Roberts - Genetics, 2015 - academic.oup.com
Fruit flies of the genus Drosophila have been an attractive and effective genetic model
organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them …
organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them …
CeNDR, the Caenorhabditis elegans natural diversity resource
DE Cook, S Zdraljevic, JP Roberts… - Nucleic acids …, 2017 - academic.oup.com
Studies in model organisms have yielded considerable insights into the etiology of disease
and our understanding of evolutionary processes. Caenorhabditis elegans is among the …
and our understanding of evolutionary processes. Caenorhabditis elegans is among the …
[HTML][HTML] Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila
High quality reference genomes are crucial to understanding genome function, structure and
evolution. The availability of reference genomes has allowed us to start inferring the role of …
evolution. The availability of reference genomes has allowed us to start inferring the role of …
[HTML][HTML] Shadow enhancers are pervasive features of developmental regulatory networks
Embryogenesis is remarkably robust to segregating mutations and environmental variation;
under a range of conditions, embryos of a given species develop into stereotypically …
under a range of conditions, embryos of a given species develop into stereotypically …