MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database

X Shao, CD Gomez, N Kapoor… - Nucleic acids …, 2023 - academic.oup.com
The extracellular matrix (ECM) is a complex assembly of proteins that constitutes the scaffold
organizing cells, tissues, and organs. Over the past decade, mass-spectrometry-based …

CryoSTEM tomography in biology

SG Wolf, M Elbaum - Methods in cell biology, 2019 - Elsevier
Electron cryo-tomography using the scanning transmission modality (STEM) enables 3D
reconstruction of unstained, vitrified specimens as thick as 1 μm or more. Contrast is related …

The phenotype of gingival fibroblasts and their potential use in advanced therapies

SLA García, MT Parada-Sanchez, DA Toro - European Journal of Cell …, 2020 - Elsevier
Advanced therapies in medicine use stem cells, gene editing, and tissues to treat a wide
range of conditions. One of their goals is to stimulate endogenous repair of tissues and …

[HTML][HTML] Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix

B Zens, F Fäßler, JM Hansen, R Hauschild… - Journal of Cell …, 2024 - rupress.org
The extracellular matrix (ECM) serves as a scaffold for cells and plays an essential role in
regulating numerous cellular processes, including cell migration and proliferation. Due to …

[HTML][HTML] Force sensing on cells and tissues by atomic force microscopy

H Holuigue, E Lorenc, M Chighizola, C Schulte… - Sensors, 2022 - mdpi.com
Biosensors are aimed at detecting tiny physical and chemical stimuli in biological systems.
Physical forces are ubiquitous, being implied in all cellular processes, including cell …

[HTML][HTML] Native extracellular matrix probes to target patient-and tissue-specific cell–microenvironment interactions by force spectroscopy

H Holuigue, L Nacci, P Di Chiaro, M Chighizola… - Nanoscale, 2023 - pubs.rsc.org
Atomic Force Microscopy (AFM) is successfully used for the quantitative investigation of the
cellular mechanosensing of the microenvironment. To this purpose, several force …

Correlating cryo-super resolution radial fluctuations and dual-axis cryo-scanning transmission electron tomography to bridge the light-electron resolution gap

P Kirchweger, D Mullick, PP Swain, SG Wolf… - Journal of structural …, 2023 - Elsevier
Visualization of organelles and their interactions with other features in the native cell
remains a challenge in modern biology. We have introduced cryo-scanning transmission …

Cancer cell migration on straight, wavy, loop and grid microfibre patterns

D Zhang, Y Sheng, N Piano, T Jakuszeit… - …, 2022 - iopscience.iop.org
Cell migration plays an important role in physiological and pathological processes where
the fibrillar morphology of extracellular matrices (ECM) could regulate the migration …

[HTML][HTML] Adhesion force spectroscopy with nanostructured colloidal probes reveals nanotopography-dependent early mechanotransductive interactions at the cell …

M Chighizola, A Previdi, T Dini, C Piazzoni, C Lenardi… - Nanoscale, 2020 - pubs.rsc.org
Mechanosensing, the ability of cells to perceive and interpret the microenvironmental
biophysical cues (such as the nanotopography), impacts strongly cellular behaviour through …

High-throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF

EF Bayne, KM Buck, AG Towler, Y Zhu… - Journal of Proteome …, 2024 - ACS Publications
The extracellular matrix (ECM) is a complex assembly of proteins that provide interstitial
scaffolding and elastic recoil for human lungs. The pulmonary extracellular matrix is …