Bioinformatics approaches and big data analytics opportunities in improving fisheries and aquaculture

MA Rather, D Agarwal, TA Bhat, IA Khan, I Zafar… - International Journal of …, 2023 - Elsevier
Aquaculture has witnessed an excellent growth rate during the last two decades and offers
huge potential to provide nutritional as well as livelihood security. Genomic research has …

[HTML][HTML] High-Temperature Stress Effect on the Red Cusk-Eel (Geypterus chilensis) Liver: Transcriptional Modulation and Oxidative Stress Damage

P Dettleff, R Zuloaga, M Fuentes, P Gonzalez, J Aedo… - Biology, 2022 - mdpi.com
Simple Summary The red cusk-eel (Genypterus chilensis) is a native Chilean species
important for aquaculture diversification in Chile. The effect of high-temperature stress on the …

Physiological and molecular responses to thermal stress in red cusk-eel (Genypterus chilensis) juveniles reveals atrophy and oxidative damage in skeletal muscle

P Dettleff, R Zuloaga, M Fuentes, P Gonzalez… - Journal of Thermal …, 2020 - Elsevier
The red cusk-eel (Genypterus chilensis) is a native species with strong potential to support
Chilean aquaculture diversification. Environmental stressors, such as temperature, may …

[HTML][HTML] mRNA-seq reveals skeletal muscle atrophy in response to handling stress in a marine teleost, the red cusk-eel (Genypterus chilensis)

JE Aedo, J Maldonado, V Aballai, JM Estrada… - BMC genomics, 2015 - Springer
Background Fish reared under intensive conditions are repeatedly exposed to stress, which
negatively impacts growth. Although most fish follow a conserved pattern of stress response …

Identification and Evaluation of Long Noncoding RNAs in Response to Handling Stress in Red Cusk-Eel (Genypterus chilensis) via RNA-seq

P Dettleff, E Hormazabal, J Aedo, M Fuentes… - Marine …, 2020 - Springer
The red cusk-eel (Genypterus chilensis) is a native species with strong potential to support
Chilean aquaculture diversification. Under commercial conditions, fish are exposed to …

Characterization of pikeperch (Sander lucioperca) transcriptome and development of SSR markers

X Han, Q Ling, C Li, G Wang, Z Xu, G Lu - Biochemical Systematics and …, 2016 - Elsevier
The pikeperch (Sander lucioperca L.) is one of the most economically important freshwater
species and has been recently explored as a potential candidate for aquaculture. To …

[HTML][HTML] Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver …

S Naour, BM Espinoza, JE Aedo, R Zuloaga… - PLoS …, 2017 - journals.plos.org
Teleosts exhibit a broad divergence in their adaptive response to stress, depending on the
magnitude, duration, and frequency of stressors and the species receiving the stimulus. We …

Gills de novo assembly reveals oxidative stress, unfolded protein, and immune response on red cusk-eel (Genypterus chilensis) under thermal stress

P Dettleff, C Toloza, M Fuentes, J Aedo… - Marine Environmental …, 2024 - Elsevier
The heat waves on the South Pacific coast could lead to thermal stress in native fish. The red
cusk-eel (Genypterus chilensis) is relevant for Chilean artisanal fisheries and aquaculture …

Comparative transcriptome analysis of Anguilla japonica livers following exposure to methylene blue

XM Lv, XL Yang, XY Xie, ZY Yang, K Hu… - Aquaculture …, 2018 - Wiley Online Library
The thiazine dye methylene blue is widely used as a disinfectant and antidote in veterinary
medicine. Here, we compared transcriptome differences in the liver of Anguilla japonica …

RNA-seq analysis of compensatory growth in the skeletal muscle of fine flounder (Paralichthys adspersus)

KN Mendez, R Zuloaga, CA Valenzuela… - Aquaculture, 2018 - Elsevier
The fine flounder (Paralichthys adspersus) is a highly quoted flatfish species in the
international and Chilean aquaculture markets. Despite presenting extraordinary nutritional …