Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

Protein purification and analysis: next generation Western blotting techniques

M Mishra, S Tiwari, AV Gomes - Expert review of proteomics, 2017 - Taylor & Francis
Introduction: Western blotting is one of the most commonly used techniques in molecular
biology and proteomics. Since western blotting is a multistep protocol, variations and errors …

Evaluation of FASP, SP3, and iST protocols for proteomic sample preparation in the low microgram range

M Sielaff, J Kuharev, T Bohn, J Hahlbrock… - Journal of proteome …, 2017 - ACS Publications
Efficient and reproducible sample preparation is a prerequisite for any robust and sensitive
quantitative bottom-up proteomics workflow. Here, we performed an independent …

In search of a universal method: a comparative survey of bottom-up proteomics sample preparation methods

G Varnavides, M Madern, D Anrather… - Journal of proteome …, 2022 - ACS Publications
Robust, efficient, and reproducible protein extraction and sample processing is a key step for
bottom-up proteomics analyses. While many sample preparation protocols for mass …

Nanoliter-scale oil-air-droplet chip-based single cell proteomic analysis

ZY Li, M Huang, XK Wang, Y Zhu, JS Li… - Analytical …, 2018 - ACS Publications
Single cell proteomic analysis provides crucial information on cellular heterogeneity in
biological systems. Herein, we describe a nanoliter-scale oil-air-droplet (OAD) chip for …

Comparison of in-solution, FASP, and S-trap based digestion methods for bottom-up proteomic studies

KR Ludwig, MM Schroll… - Journal of proteome …, 2018 - ACS Publications
Bottom-up proteomic strategies rely on efficient digestion of proteins into peptides for mass
spectrometry analysis. In-solution and filter-based strategies are commonly used for …

Evaluation and improvement of quantification accuracy in isobaric mass tag-based protein quantification experiments

E Ahrné, T Glatter, C Viganò, C Schubert… - Journal of proteome …, 2016 - ACS Publications
The multiplexing capabilities of isobaric mass tag-based protein quantification, such as
Tandem Mass Tags or Isobaric Tag for Relative and Absolute Quantitation have dramatically …

Suspension trapping-based sample preparation workflow for in-depth plant phosphoproteomics

CW Chen, CF Tsai, MH Lin, SY Lin… - Analytical Chemistry, 2023 - ACS Publications
Plant phosphoproteomics provides a global view of phosphorylation-mediated signaling in
plants; however, it demands high-throughput methods with sensitive detection and accurate …

Unified workflow for the rapid and in-depth characterization of bacterial proteomes

M Abele, E Doll, FP Bayer, C Meng, N Lomp… - Molecular & Cellular …, 2023 - ASBMB
Bacteria are the most abundant and diverse organisms among the kingdoms of life. Due to
this excessive variance, finding a unified, comprehensive, and safe workflow for quantitative …

Assessing the impact of protein extraction methods for human gut metaproteomics

X Zhang, L Li, J Mayne, Z Ning, A Stintzi, D Figeys - Journal of proteomics, 2018 - Elsevier
Metaproteomics is a promising methodology for the functional characterizations of the gut
microbiome. However, the performance of metaproteomic analysis is affected by protein …