Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Parallel ddRAD and genome skimming analyses reveal a radiative and reticulate evolutionary history of the temperate bamboos

C Guo, PF Ma, GQ Yang, XY Ye, Y Guo… - Systematic …, 2021 - academic.oup.com
Rapid evolutionary radiations are among the most challenging phylogenetic problems,
wherein different types of data (eg, morphology and molecular) or genetic markers (eg …

[HTML][HTML] A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)?

IH Segherloo, J Freyhof, P Berrebi, AL Ferchaud… - Molecular Phylogenetics …, 2021 - Elsevier
There are particular challenges in defining the taxonomic status of recently radiated groups
due to the low level of phylogenetic signal. Members of the Salmo trutta species-complex …

Using molecular markers to investigate genetic diversity, mating system and gene flow of Neotropical trees

CC Vinson, E Mangaravite, AM Sebbenn… - Brazilian Journal of …, 2018 - Springer
Genetic analysis provides a robust method for understanding the ways in which human
interventions in ecosystems may affect genetic diversity and species survival, providing an …

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)

MK Brandrud, J Baar, MT Lorenzo… - Systematic …, 2020 - academic.oup.com
Disentangling phylogenetic relationships proves challenging for groups that have evolved
recently, especially if there is ongoing reticulation. Although they are in most cases …

Advances in computational methods for phylogenetic networks in the presence of hybridization

RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh - … and phylogenetics: seminal …, 2019 - Springer
Phylogenetic networks extend phylogenetic trees to allow for modeling reticulate
evolutionary processes such as hybridization. They take the shape of a rooted, directed …

From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales

JF Walker, Y Yang, T Feng, A Timoneda… - American Journal of …, 2018 - Wiley Online Library
Premise of the Study The Caryophyllales contain~ 12,500 species and are known for their
cosmopolitan distribution, convergence of trait evolution, and extreme adaptations. Some …

Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation

K Van Poucke, A Haegeman, T Goedefroit, F Focquet… - IMA fungus, 2021 - Springer
The genus Phytophthora comprises many economically and ecologically important plant
pathogens. Hybrid species have previously been identified in at least six of the 12 …

Hundreds of nuclear and plastid loci yield novel insights into orchid relationships

OA Pérez‐Escobar, S Dodsworth… - American Journal of …, 2021 - Wiley Online Library
PREMISE The inference of evolutionary relationships in the species‐rich family Orchidaceae
has hitherto relied heavily on plastid DNA sequences and limited taxon sampling. Previous …

The radiation of Darwin's giant daisies in the Galápagos Islands

M Fernández-Mazuecos, P Vargas, RA McCauley… - Current Biology, 2020 - cell.com
Evolutionary radiations on oceanic islands have fascinated biologists since Darwin's
exploration of the Galápagos archipelago [1, 2]. Island radiations can provide key insights …