What are higher-order networks?

C Bick, E Gross, HA Harrington, MT Schaub - SIAM Review, 2023 - SIAM
Network-based modeling of complex systems and data using the language of graphs has
become an essential topic across a range of different disciplines. Arguably, this graph-based …

A survey of topological machine learning methods

F Hensel, M Moor, B Rieck - Frontiers in Artificial Intelligence, 2021 - frontiersin.org
The last decade saw an enormous boost in the field of computational topology: methods and
concepts from algebraic and differential topology, formerly confined to the realm of pure …

[图书][B] Computational topology for data analysis

TK Dey, Y Wang - 2022 - books.google.com
" In this chapter, we introduce some of the very basics that are used throughout the book.
First, we give the definition of a topological space and related notions of open and closed …

Big-data science in porous materials: materials genomics and machine learning

KM Jablonka, D Ongari, SM Moosavi, B Smit - Chemical reviews, 2020 - ACS Publications
By combining metal nodes with organic linkers we can potentially synthesize millions of
possible metal–organic frameworks (MOFs). The fact that we have so many materials opens …

[HTML][HTML] Topological data analysis in biomedicine: A review

Y Skaf, R Laubenbacher - Journal of Biomedical Informatics, 2022 - Elsevier
Significant technological advances made in recent years have shepherded a dramatic
increase in utilization of digital technologies for biomedicine–everything from the …

[HTML][HTML] An introduction to topological data analysis: fundamental and practical aspects for data scientists

F Chazal, B Michel - Frontiers in artificial intelligence, 2021 - frontiersin.org
Topological Data Analysis (TDA) is a recent and fast growing field providing a set of new
topological and geometric tools to infer relevant features for possibly complex data. This …

Z-GCNETs: Time zigzags at graph convolutional networks for time series forecasting

Y Chen, I Segovia, YR Gel - International Conference on …, 2021 - proceedings.mlr.press
There recently has been a surge of interest in developing a new class of deep learning (DL)
architectures that integrate an explicit time dimension as a fundamental building block of …

Topology-preserving deep image segmentation

X Hu, F Li, D Samaras, C Chen - Advances in neural …, 2019 - proceedings.neurips.cc
Segmentation algorithms are prone to make topological errors on fine-scale struc-tures, eg,
broken connections. We propose a novel method that learns to segment with correct …

[PDF][PDF] A roadmap for the computation of persistent homology

N Otter, MA Porter, U Tillmann, P Grindrod… - EPJ Data Science, 2017 - Springer
Persistent homology (PH) is a method used in topological data analysis (TDA) to study
qualitative features of data that persist across multiple scales. It is robust to perturbations of …

Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models

Y Qiu, GW Wei - Briefings in bioinformatics, 2023 - academic.oup.com
Protein engineering is an emerging field in biotechnology that has the potential to
revolutionize various areas, such as antibody design, drug discovery, food security, ecology …