What are higher-order networks?
Network-based modeling of complex systems and data using the language of graphs has
become an essential topic across a range of different disciplines. Arguably, this graph-based …
become an essential topic across a range of different disciplines. Arguably, this graph-based …
A survey of topological machine learning methods
The last decade saw an enormous boost in the field of computational topology: methods and
concepts from algebraic and differential topology, formerly confined to the realm of pure …
concepts from algebraic and differential topology, formerly confined to the realm of pure …
Big-data science in porous materials: materials genomics and machine learning
By combining metal nodes with organic linkers we can potentially synthesize millions of
possible metal–organic frameworks (MOFs). The fact that we have so many materials opens …
possible metal–organic frameworks (MOFs). The fact that we have so many materials opens …
[HTML][HTML] Topological data analysis in biomedicine: A review
Y Skaf, R Laubenbacher - Journal of Biomedical Informatics, 2022 - Elsevier
Significant technological advances made in recent years have shepherded a dramatic
increase in utilization of digital technologies for biomedicine–everything from the …
increase in utilization of digital technologies for biomedicine–everything from the …
[HTML][HTML] An introduction to topological data analysis: fundamental and practical aspects for data scientists
Topological Data Analysis (TDA) is a recent and fast growing field providing a set of new
topological and geometric tools to infer relevant features for possibly complex data. This …
topological and geometric tools to infer relevant features for possibly complex data. This …
Z-GCNETs: Time zigzags at graph convolutional networks for time series forecasting
There recently has been a surge of interest in developing a new class of deep learning (DL)
architectures that integrate an explicit time dimension as a fundamental building block of …
architectures that integrate an explicit time dimension as a fundamental building block of …
Topology-preserving deep image segmentation
Segmentation algorithms are prone to make topological errors on fine-scale struc-tures, eg,
broken connections. We propose a novel method that learns to segment with correct …
broken connections. We propose a novel method that learns to segment with correct …
[PDF][PDF] A roadmap for the computation of persistent homology
Persistent homology (PH) is a method used in topological data analysis (TDA) to study
qualitative features of data that persist across multiple scales. It is robust to perturbations of …
qualitative features of data that persist across multiple scales. It is robust to perturbations of …
Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models
Protein engineering is an emerging field in biotechnology that has the potential to
revolutionize various areas, such as antibody design, drug discovery, food security, ecology …
revolutionize various areas, such as antibody design, drug discovery, food security, ecology …