Polymer translocation: the first two decades and the recent diversification

VV Palyulin, T Ala-Nissila, R Metzler - Soft matter, 2014 - pubs.rsc.org
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …

Single-polymer dynamics under constraints: scaling theory and computer experiment

A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …

[图书][B] Polymer translocation

M Muthukumar - 2016 - books.google.com
A reflection of the significant advances in the field, this book discusses the macromolecular
basis of polymer translocation that have emerged based on experimentation, new models …

Sucking genes into pores: Insight into driven translocation

T Sakaue - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
Flexible polymers such as long DNA, RNA molecules, and proteins, can pass through a
narrow pore whose size is comparable to their molecular thickness. We highlight the …

Unifying model of driven polymer translocation

T Ikonen, A Bhattacharya, T Ala-Nissila, W Sung - Physical Review E …, 2012 - APS
We present a Brownian dynamics model of driven polymer translocation, in which
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …

Smooth DNA transport through a narrowed pore geometry

S Carson, J Wilson, A Aksimentiev, M Wanunu - Biophysical journal, 2014 - cell.com
Voltage-driven transport of double-stranded DNA through nanoscale pores holds much
potential for applications in quantitative molecular biology and biotechnology, yet the …

Driven polymer translocation through nanopores: Slow-vs.-fast dynamics

K Luo, T Ala-Nissila, SC Ying, R Metzler - Europhysics letters, 2010 - iopscience.iop.org
We investigate the dynamics of polymer translocation through nanopores under external
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …

Force-driven polymer translocation through a nanopore: An old problem revisited

P Rowghanian, AY Grosberg - The Journal of Physical Chemistry …, 2011 - ACS Publications
We consider DNA translocation through a pore in a planar membrane. The pore is so narrow
that only one DNA segment can fit in. Assuming that the biasing force f acts inside the pore …

Influence of non-universal effects on dynamical scaling in driven polymer translocation

T Ikonen, A Bhattacharya, T Ala-Nissila… - The Journal of chemical …, 2012 - pubs.aip.org
We study the dynamics of driven polymer translocation using both molecular dynamics (MD)
simulations and a theoretical model based on the non-equilibrium tension propagation on …

Iso-flux tension propagation theory of driven polymer translocation: The role of initial configurations

J Sarabadani, T Ikonen, T Ala-Nissila - The Journal of Chemical …, 2014 - pubs.aip.org
We investigate the dynamics of pore-driven polymer translocation by theoretical analysis
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …