MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples

M Miya, RO Gotoh, T Sado - Fisheries Science, 2020 - Springer
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

A Valentini, P Taberlet, C Miaud, R Civade… - Molecular …, 2016 - Wiley Online Library
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

ZSL Foster, TJ Sharpton… - PLoS computational …, 2017 - journals.plos.org
Community-level data, the type generated by an increasing number of metabarcoding
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa …

Non‐specific amplification compromises environmental DNA metabarcoding with COI

RA Collins, J Bakker, OS Wangensteen… - Methods in Ecology …, 2019 - Wiley Online Library
Metabarcoding extra‐organismal DNA from environmental samples is now a key technique
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …

obitools: a unix‐inspired software package for DNA metabarcoding

F Boyer, C Mercier, A Bonin, Y Le Bras… - Molecular ecology …, 2016 - Wiley Online Library
DNA metabarcoding offers new perspectives in biodiversity research. This recently
developed approach to ecosystem study relies heavily on the use of next‐generation …

The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection

S Tsuji, T Takahara, H Doi, N Shibata… - Environmental …, 2019 - Wiley Online Library
The field of environmental DNA (eDNA) analysis has rapidly developed over the past
decade and the technique has become widely used for detecting aquatic macroorganisms in …

The detection of aquatic animal species using environmental DNA–a review of eDNA as a survey tool in ecology

HC Rees, BC Maddison, DJ Middleditch… - Journal of applied …, 2014 - Wiley Online Library
Knowledge of species distribution is critical to ecological management and conservation
biology. Effective management requires the detection of populations, which can sometimes …

Environmental DNA illuminates the dark diversity of sharks

G Boussarie, J Bakker, OS Wangensteen, S Mariani… - Science …, 2018 - science.org
In the era of “Anthropocene defaunation,” large species are often no longer detected in
habitats where they formerly occurred. However, it is unclear whether this apparent missing …