Computational approaches to therapeutic antibody design: established methods and emerging trends
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
How can we discover developable antibody-based biotherapeutics?
Antibody-based biotherapeutics have emerged as a successful class of pharmaceuticals
despite significant challenges and risks to their discovery and development. This review …
despite significant challenges and risks to their discovery and development. This review …
Protein aggregation: in silico algorithms and applications
Protein aggregation is a topic of immense interest to the scientific community due to its role
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
Exploring the sequence features determining amyloidosis in human antibody light chains
The light chain (AL) amyloidosis is caused by the aggregation of light chain of antibodies
into amyloid fibrils. There are plenty of computational resources available for the prediction …
into amyloid fibrils. There are plenty of computational resources available for the prediction …
[HTML][HTML] Accelerating therapeutic protein design with computational approaches toward the clinical stage
Therapeutic protein, represented by antibodies, is of increasing interest in human medicine.
However, clinical translation of therapeutic protein is still largely hindered by different …
However, clinical translation of therapeutic protein is still largely hindered by different …
Machine learning approaches in diagnosis, prognosis and treatment selection of cardiac amyloidosis
Cardiac amyloidosis is an uncommon restrictive cardiomyopathy featuring an unregulated
amyloid protein deposition that impairs organic function. Early cardiac amyloidosis …
amyloid protein deposition that impairs organic function. Early cardiac amyloidosis …
CPAD 2.0: a repository of curated experimental data on aggregating proteins and peptides
Abstract The Curated Protein Aggregation Database (CPAD) is a manually curated and
open-access database dedicated to providing comprehensive information related to …
open-access database dedicated to providing comprehensive information related to …
Understanding the mutational frequency in SARS-CoV-2 proteome using structural features
The prolonged transmission of the severe acute respiratory syndrome coronavirus 2 (SARS-
CoV-2) virus in the human population has led to demographic divergence and the …
CoV-2) virus in the human population has led to demographic divergence and the …
Investigating the mechanism of action of aggregation-inducing antimicrobial Pept-ins
G Wu, L Khodaparast, L Khodaparast… - Cell Chemical …, 2021 - cell.com
Aggregation can be selectively induced by aggregation-prone regions (APRs) contained in
the target proteins. Aggregation-inducing antimicrobial peptides (Pept-ins) contain …
the target proteins. Aggregation-inducing antimicrobial peptides (Pept-ins) contain …
NmSEER V2. 0: a prediction tool for 2′-O-methylation sites based on random forest and multi-encoding combination
Y Zhou, Q Cui, Y Zhou - BMC bioinformatics, 2019 - Springer
Abstract Background 2′-O-methylation (2′-O-me or Nm) is a post-transcriptional RNA
methylation modified at 2′-hydroxy, which is common in mRNAs and various non-coding …
methylation modified at 2′-hydroxy, which is common in mRNAs and various non-coding …