Relating sequence encoded information to form and function of intrinsically disordered proteins
Highlights•Compositions of IDPs fall into distinct classes.•Compositional classes encode
preferences for distinct conformational classes.•Functions of disordered proteins are …
preferences for distinct conformational classes.•Functions of disordered proteins are …
Phase separation in biology; functional organization of a higher order
DM Mitrea, RW Kriwacki - Cell Communication and Signaling, 2016 - Springer
Inside eukaryotic cells, macromolecules are partitioned into membrane-bounded
compartments and, within these, some are further organized into non-membrane-bounded …
compartments and, within these, some are further organized into non-membrane-bounded …
Intrinsically disordered linkers determine the interplay between phase separation and gelation in multivalent proteins
Phase transitions of linear multivalent proteins control the reversible formation of many
intracellular membraneless bodies. Specific non-covalent crosslinks involving …
intracellular membraneless bodies. Specific non-covalent crosslinks involving …
Tuning the flexibility of glycine-serine linkers to allow rational design of multidomain proteins
M Van Rosmalen, M Krom, M Merkx - Biochemistry, 2017 - ACS Publications
Flexible polypeptide linkers composed of glycine and serine are important components of
engineered multidomain proteins. We have previously shown that the conformational …
engineered multidomain proteins. We have previously shown that the conformational …
Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck
The organization of membranes, the cytosol, and the nucleus of eukaryotic cells can be
controlled through phase separation of lipids, proteins, and nucleic acids. Collective …
controlled through phase separation of lipids, proteins, and nucleic acids. Collective …
Cryptic sequence features within the disordered protein p27Kip1 regulate cell cycle signaling
RK Das, Y Huang, AH Phillips… - Proceedings of the …, 2016 - National Acad Sciences
Peptide motifs embedded within intrinsically disordered regions (IDRs) of proteins are often
the sites of posttranslational modifications that control cell-signaling pathways. How do IDR …
the sites of posttranslational modifications that control cell-signaling pathways. How do IDR …
Machine learning generation of dynamic protein conformational ensembles
LE Zheng, S Barethiya, E Nordquist, J Chen - Molecules, 2023 - mdpi.com
Machine learning has achieved remarkable success across a broad range of scientific and
engineering disciplines, particularly its use for predicting native protein structures from …
engineering disciplines, particularly its use for predicting native protein structures from …
Toward accurate coarse-grained simulations of disordered proteins and their dynamic interactions
Intrinsically disordered proteins (IDPs) play crucial roles in cellular regulatory networks and
are now recognized to often remain highly dynamic even in specific interactions and …
are now recognized to often remain highly dynamic even in specific interactions and …
Sequence-to-conformation relationships of disordered regions tethered to folded domains of proteins
Intrinsically disordered proteins and regions (IDPs/IDRs) are characterized by well-defined
sequence-to-conformation relationships (SCRs). These relationships refer to the sequence …
sequence-to-conformation relationships (SCRs). These relationships refer to the sequence …
Targeting intrinsically disordered proteins through dynamic interactions
Intrinsically disordered proteins (IDPs) are over-represented in major disease pathways and
have attracted significant interest in understanding if and how they may be targeted using …
have attracted significant interest in understanding if and how they may be targeted using …