[HTML][HTML] Choosing and using a plant DNA barcode

PM Hollingsworth, SW Graham, DP Little - PloS one, 2011 - journals.plos.org
The main aim of DNA barcoding is to establish a shared community resource of DNA
sequences that can be used for organismal identification and taxonomic clarification. This …

Potential of molecular markers in plant biotechnology

P Kumar, VK Gupta, AK Misra, DR Modi… - Plant omics, 2009 - search.informit.org
During the last few decades, the use of molecular markers, revealing polymorphism at the
DNA level, has been playing an increasing part in plant biotechnology and their genetics …

[HTML][HTML] Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

H Huang, C Shi, Y Liu, SY Mao, LZ Gao - BMC Evolutionary biology, 2014 - Springer
Background Camellia is an economically and phylogenetically important genus in the family
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …

Evolutionary ecology of plant adaptation to serpentine soils

KU Brady, AR Kruckeberg… - Annu. Rev. Ecol. Evol …, 2005 - annualreviews.org
▪ Abstract Plant adaptation to serpentine soil has been a topic of study for many decades, yet
investigation of the genetic component of this adaptation has only recently begun. We …

Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

GN Feliner, JA Rosselló - Molecular phylogenetics and evolution, 2007 - Elsevier
The internal transcribed spacers (ITS) of the nuclear ribosomal 18S–5.8 S–26S cistron
continue to be the most popular non-plastid region for species-level phylogenetic studies of …

A statistical approach for distinguishing hybridization and incomplete lineage sorting

S Joly, PA McLenachan… - The American …, 2009 - journals.uchicago.edu
The extent and evolutionary significance of hybridization is difficult to evaluate because of
the difficulty in distinguishing hybridization from incomplete lineage sorting. Here we present …

DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach

SG Newmaster, AJ Fazekas, S Ragupathy - Botany, 2006 - cdnsciencepub.com
DNA barcoding based on the mitochondrial cytochrome c oxidase 1 (cox1) sequence is
being employed for diverse groups of animals with demonstrated success in species …

Malpighiales phylogenetics: gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

KJ Wurdack, CC Davis - American Journal of Botany, 2009 - Wiley Online Library
The eudicot order Malpighiales contains∼ 16000 species and is the most poorly resolved
large rosid clade. To clarify phylogenetic relationships in the order, we used maximum …

[HTML][HTML] A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

C Li, G Ortí, G Zhang, G Lu - BMC Evolutionary Biology, 2007 - Springer
Background Molecular systematics occupies one of the central stages in biology in the
genomic era, ushered in by unprecedented progress in DNA technology. The inference of …

[HTML][HTML] Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levels

JM Duarte, PK Wall, PP Edger, LL Landherr… - BMC evolutionary …, 2010 - Springer
Background Although the overwhelming majority of genes found in angiosperms are
members of gene families, and both gene-and genome-duplication are pervasive forces in …