Hydroxyl radical protein footprinting: a mass spectrometry-based structural method for studying the higher order structure of proteins

A McKenzie-Coe, NS Montes, LM Jones - Chemical reviews, 2021 - ACS Publications
Hydroxyl radical protein footprinting (HRPF) coupled to mass spectrometry has been
successfully used to investigate a plethora of protein-related questions. The method, which …

Hydroxyl radical-mediated modification of proteins as probes for structural proteomics

G Xu, MR Chance - Chemical reviews, 2007 - ACS Publications
“Footprinting” refers to assays that examine ligand binding and conformational changes by
determining the solvent accessibility of the backbone, bases, or side chain structures of …

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

J Sangodkar, A Perl, R Tohme, J Kiselar… - The Journal of …, 2017 - Am Soc Clin Investig
Targeted cancer therapies, which act on specific cancer-associated molecular targets, are
predominantly inhibitors of oncogenic kinases. While these drugs have achieved some …

Integration of mass spectrometry data for structural biology

HM Britt, T Cragnolini, K Thalassinos - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) is increasingly being used to probe the structure and dynamics of
proteins and the complexes they form with other macromolecules. There are now several …

Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale

DM Hambly, ML Gross - Journal of the American Society for Mass …, 2005 - ACS Publications
Footprinting of proteins by hydroxyl radicals generated on the millisecond to minute
timescales to probe protein surfaces suffers from the uncertainty that radical reactions cause …

Mass spectrometry for structural characterization of therapeutic antibodies

Z Zhang, H Pan, X Chen - Mass spectrometry reviews, 2009 - Wiley Online Library
Antibodies, also known as immunoglobulins, have emerged as one of the most promising
classes of therapeutics in the biopharmaceutical industry. The need for complete …

Radiolytic protein footprinting with mass spectrometry to probe the structure of macromolecular complexes

K Takamoto, MR Chance - Annu. Rev. Biophys. Biomol. Struct., 2006 - annualreviews.org
Structural proteomics approaches using mass spectrometry are increasingly used in biology
to examine the composition and structure of macromolecules. Hydroxyl radical–mediated …

Fast photochemical oxidation of protein footprints faster than protein unfolding

BC Gau, JS Sharp, DL Rempel, ML Gross - Analytical chemistry, 2009 - ACS Publications
Fast photochemical oxidation of proteins (FPOP) is a chemical footprinting method whereby
exposed amino-acid residues are covalently labeled by oxidation with hydroxyl radicals …

Covalent labeling-mass spectrometry with non-specific reagents for studying protein structure and interactions

P Limpikirati, T Liu, RW Vachet - Methods, 2018 - Elsevier
Using mass spectrometry (MS) to obtain information about a higher order structure of protein
requires that a protein's structural properties are encoded into the mass of that protein …

Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry

JS Sharp, JM Becker, RL Hettich - Analytical chemistry, 2004 - ACS Publications
Protein surfaces are important in most biological processes, including protein− protein
interactions, enzymatic catalysis, and protein− ligand binding. We report a method in which …