The effects of non-synonymous single nucleotide polymorphisms (nsSNPs) on protein–protein interactions

CM Yates, MJE Sternberg - Journal of molecular biology, 2013 - Elsevier
Non-synonymous single nucleotide polymorphisms (nsSNPs) are single base changes
leading to a change to the amino acid sequence of the encoded protein. Many of these …

In silico Approaches for the Design and Optimization of Interfering Peptides Against Protein–Protein Interactions

ZS Hashemi, M Zarei, MK Fath, M Ganji… - Frontiers in Molecular …, 2021 - frontiersin.org
Large contact surfaces of protein–protein interactions (PPIs) remain to be an ongoing issue
in the discovery and design of small molecule modulators. Peptides are intrinsically capable …

Molecular evolution of cytochrome c oxidase underlies high-altitude adaptation in the bar-headed goose

GR Scott, PM Schulte, S Egginton… - Molecular biology …, 2011 - academic.oup.com
Bar-headed geese (Anser indicus) fly at up to 9,000 m elevation during their migration over
the Himalayas, sustaining high metabolic rates in the severe hypoxia at these altitudes. We …

Plasticity and redundancy among AMA–RON pairs ensure host cell entry of Toxoplasma parasites

MH Lamarque, M Roques, M Kong-Hap… - Nature …, 2014 - nature.com
Malaria and toxoplasmosis are infectious diseases caused by the apicomplexan parasites
Plasmodium and Toxoplasma gondii, respectively. These parasites have developed an …

Immunization with a functional protein complex required for erythrocyte invasion protects against lethal malaria

P Srinivasan, E Ekanem, A Diouf… - Proceedings of the …, 2014 - National Acad Sciences
An essential step in the invasion of red blood cells (RBCs) by Plasmodium falciparum (Pf)
merozoites is the binding of rhoptry neck protein 2 (RON2) to the hydrophobic groove of …

Refining the structural model of a heterohexameric protein complex: Surface induced dissociation and ion mobility provide key connectivity and topology information

Y Song, MT Nelp, V Bandarian, VH Wysocki - ACS central science, 2015 - ACS Publications
Toyocamycin nitrile hydratase (TNH) is a protein hexamer that catalyzes the hydration of
toyocamycin to produce sangivamycin. The structure of hexameric TNH and the …

Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes

DJ Macqueen, D Garcia de la serrana… - … Biology and Evolution, 2013 - academic.oup.com
Whole-genome duplication (WGD) was experienced twice by the vertebrate ancestor (2
rounds; 2R), again by the teleost fish ancestor (3R) and most recently in certain teleost …

Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase

G Neveu, P Cassonnet, PO Vidalain, C Rolloy… - Methods, 2012 - Elsevier
Comparative interactomics is a strategy for inferring potential interactions among
orthologous proteins or “interologs”. Herein we focus, in contrast to standard homology …

Exploring polypharmacology in drug discovery and repurposing using the CANDO platform

G Chopra, R Samudrala - Current pharmaceutical design, 2016 - ingentaconnect.com
Background: Traditional drug discovery approaches focus on a limited set of target
molecules for treatment against specific indications/diseases. However, drug absorption …

Structural bioinformatics of the interactome

D Petrey, B Honig - Annual review of biophysics, 2014 - annualreviews.org
The past decade has seen a dramatic expansion in the number and range of techniques
available to obtain genome-wide information and to analyze this information so as to infer …