Protein–protein interactions: detection, reliability assessment and applications
Protein–protein interactions (PPIs) participate in all important biological processes in living
organisms, such as catalyzing metabolic reactions, DNA replication, DNA transcription …
organisms, such as catalyzing metabolic reactions, DNA replication, DNA transcription …
Data integration and predictive modeling methods for multi-omics datasets
M Kim, I Tagkopoulos - Molecular omics, 2018 - pubs.rsc.org
Translating data to knowledge and actionable insights is the Holy Grail for many scientific
fields, including biology. The unprecedented massive and heterogeneous data have created …
fields, including biology. The unprecedented massive and heterogeneous data have created …
Exploring protein-protein interactions at the proteome level
Proteins are central to all of the processes of life. For their activity, they almost invariably
need to interact with other macromolecules, be they nucleic acids, membranes, glycans, or …
need to interact with other macromolecules, be they nucleic acids, membranes, glycans, or …
Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor
V Velásquez-Zapata, JM Elmore… - PLoS Computational …, 2021 - journals.plos.org
Protein-protein interaction networks are one of the most effective representations of cellular
behavior. In order to build these models, high-throughput techniques are required. Next …
behavior. In order to build these models, high-throughput techniques are required. Next …
A localized Pseudomonas syringae infection triggers systemic clock responses in Arabidopsis
The circadian clock drives daily rhythms of many plant physiological responses, providing a
competitive advantage that improves plant fitness and survival rates [1–5]. Whereas multiple …
competitive advantage that improves plant fitness and survival rates [1–5]. Whereas multiple …
C2orf69 mutations disrupt mitochondrial function and cause a multisystem human disorder with recurring autoinflammation
E Lausberg, S Gießelmann, JP Dewulf… - The Journal of …, 2021 - Am Soc Clin Investig
BACKGROUND Deciphering the function of the many genes previously classified as
uncharacterized open reading frame (ORF) would complete our understanding of a cell's …
uncharacterized open reading frame (ORF) would complete our understanding of a cell's …
NGPINT: a next-generation protein–protein interaction software
S Banerjee, V Velásquez-Zapata… - Briefings in …, 2021 - academic.oup.com
Mapping protein–protein interactions at a proteome scale is critical to understanding how
cellular signaling networks respond to stimuli. Since eukaryotic genomes encode thousands …
cellular signaling networks respond to stimuli. Since eukaryotic genomes encode thousands …
Powdery mildew effectors AVRA1 and BEC1016 target the ER J‐domain protein HvERdj3B required for immunity in barley
The barley powdery mildew fungus, Blumeria hordei (Bh), secretes hundreds of candidate
secreted effector proteins (CSEPs) to facilitate pathogen infection and colonization. One of …
secreted effector proteins (CSEPs) to facilitate pathogen infection and colonization. One of …
Identification of host factors binding to dengue and Zika virus subgenomic RNA by efficient yeast three-hybrid screens of the human ORFeome
S Jansen, E Smlatic, D Copmans, S Debaveye… - RNA biology, 2021 - Taylor & Francis
Flaviviruses such as the dengue (DENV) and the Zika virus (ZIKV) are important human
pathogens causing around 100 million symptomatic infections each year. During infection …
pathogens causing around 100 million symptomatic infections each year. During infection …
DoMY-Seq: A yeast two-hybrid–based technique for precision mapping of protein–protein interaction motifs
P Castel, A Holtz-Morris, Y Kwon, BP Suter… - Journal of Biological …, 2021 - ASBMB
Interactions between proteins are fundamental for every biological process and especially
important in cell signaling pathways. Biochemical techniques that evaluate these protein …
important in cell signaling pathways. Biochemical techniques that evaluate these protein …