Protein–protein interactions: detection, reliability assessment and applications

X Peng, J Wang, W Peng, FX Wu… - Briefings in …, 2017 - academic.oup.com
Protein–protein interactions (PPIs) participate in all important biological processes in living
organisms, such as catalyzing metabolic reactions, DNA replication, DNA transcription …

Data integration and predictive modeling methods for multi-omics datasets

M Kim, I Tagkopoulos - Molecular omics, 2018 - pubs.rsc.org
Translating data to knowledge and actionable insights is the Holy Grail for many scientific
fields, including biology. The unprecedented massive and heterogeneous data have created …

Exploring protein-protein interactions at the proteome level

H Elhabashy, F Merino, V Alva, O Kohlbacher… - Structure, 2022 - cell.com
Proteins are central to all of the processes of life. For their activity, they almost invariably
need to interact with other macromolecules, be they nucleic acids, membranes, glycans, or …

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor

V Velásquez-Zapata, JM Elmore… - PLoS Computational …, 2021 - journals.plos.org
Protein-protein interaction networks are one of the most effective representations of cellular
behavior. In order to build these models, high-throughput techniques are required. Next …

A localized Pseudomonas syringae infection triggers systemic clock responses in Arabidopsis

Z Li, K Bonaldi, F Uribe, JL Pruneda-Paz - Current Biology, 2018 - cell.com
The circadian clock drives daily rhythms of many plant physiological responses, providing a
competitive advantage that improves plant fitness and survival rates [1–5]. Whereas multiple …

C2orf69 mutations disrupt mitochondrial function and cause a multisystem human disorder with recurring autoinflammation

E Lausberg, S Gießelmann, JP Dewulf… - The Journal of …, 2021 - Am Soc Clin Investig
BACKGROUND Deciphering the function of the many genes previously classified as
uncharacterized open reading frame (ORF) would complete our understanding of a cell's …

NGPINT: a next-generation protein–protein interaction software

S Banerjee, V Velásquez-Zapata… - Briefings in …, 2021 - academic.oup.com
Mapping protein–protein interactions at a proteome scale is critical to understanding how
cellular signaling networks respond to stimuli. Since eukaryotic genomes encode thousands …

Powdery mildew effectors AVRA1 and BEC1016 target the ER J‐domain protein HvERdj3B required for immunity in barley

Z Li, V Velásquez‐Zapata, JM Elmore… - Molecular Plant …, 2024 - Wiley Online Library
The barley powdery mildew fungus, Blumeria hordei (Bh), secretes hundreds of candidate
secreted effector proteins (CSEPs) to facilitate pathogen infection and colonization. One of …

Identification of host factors binding to dengue and Zika virus subgenomic RNA by efficient yeast three-hybrid screens of the human ORFeome

S Jansen, E Smlatic, D Copmans, S Debaveye… - RNA biology, 2021 - Taylor & Francis
Flaviviruses such as the dengue (DENV) and the Zika virus (ZIKV) are important human
pathogens causing around 100 million symptomatic infections each year. During infection …

DoMY-Seq: A yeast two-hybrid–based technique for precision mapping of protein–protein interaction motifs

P Castel, A Holtz-Morris, Y Kwon, BP Suter… - Journal of Biological …, 2021 - ASBMB
Interactions between proteins are fundamental for every biological process and especially
important in cell signaling pathways. Biochemical techniques that evaluate these protein …