[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …
numerous studies have investigated the consistency of this technique with traditional …
Trends in digital image processing of isolated microalgae by incorporating classification algorithm
Identification of microalgae species is of importance due to the uprising of harmful algae
blooms affecting both the aquatic habitat and human health. Despite this occurence …
blooms affecting both the aquatic habitat and human health. Despite this occurence …
[HTML][HTML] Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform
L Sinclair, OA Osman, S Bertilsson, A Eiler - PloS one, 2015 - journals.plos.org
As new sequencing technologies become cheaper and older ones disappear, laboratories
switch vendors and platforms. Validating the new setups is a crucial part of conducting …
switch vendors and platforms. Validating the new setups is a crucial part of conducting …
Next generation sequencing approaches to evaluate water and wastewater quality
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …
address complex microbiological challenges in the water industry. NGS technologies can …
Design and evaluation of Illumina MiSeq-compatible, 18S rRNA gene-specific primers for improved characterization of mixed phototrophic communities
The use of high-throughput sequencing technologies with the 16S rRNA gene for
characterization of bacterial and archaeal communities has become routine. However, the …
characterization of bacterial and archaeal communities has become routine. However, the …
Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
Diatoms are frequently used for water quality assessments; however, identification to
species level is difficult, time‐consuming and needs in‐depth knowledge of the organisms …
species level is difficult, time‐consuming and needs in‐depth knowledge of the organisms …
Decomposing multiple dimensions of stability in global change experiments
Ecological stability is the central framework to understand an ecosystem's ability to absorb or
recover from environmental change. Recent modelling and conceptual work suggests that …
recover from environmental change. Recent modelling and conceptual work suggests that …
Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding
The biodiverse Neotropical ecoregion remains insufficiently assessed, poorly managed, and
threatened by unregulated human activities. Novel, rapid and cost-effective DNA-based …
threatened by unregulated human activities. Novel, rapid and cost-effective DNA-based …