[HTML][HTML] Detection of genomic structural variants from next-generation sequencing data

L Tattini, R D'Aurizio, A Magi - Frontiers in bioengineering and …, 2015 - frontiersin.org
Structural variants are genomic rearrangements larger than 50 bp accounting for around 1%
of the variation among human genomes. They impact on phenotypic diversity and play a role …

Recent advances in epilepsy genetics

A Orsini, F Zara, P Striano - Neuroscience letters, 2018 - Elsevier
In last few years there has been rapid increase in the knowledge of epilepsy genetics.
Nowadays, it is estimated that genetic epilepsies include over than 30% of all epilepsy …

Accurate detection of complex structural variations using single-molecule sequencing

FJ Sedlazeck, P Rescheneder, M Smolka, H Fang… - Nature …, 2018 - nature.com
Structural variations are the greatest source of genetic variation, but they remain poorly
understood because of technological limitations. Single-molecule long-read sequencing has …

Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants

A Belkadi, A Bolze, Y Itan, A Cobat… - Proceedings of the …, 2015 - National Acad Sciences
We compared whole-exome sequencing (WES) and whole-genome sequencing (WGS) in
six unrelated individuals. In the regions targeted by WES capture (81.5% of the consensus …

[HTML][HTML] Multicentric pilot study to standardize clinical whole exome sequencing (WES) for cancer patients

M Menzel, S Ossowski, S Kral, P Metzger… - NPJ Precision …, 2023 - nature.com
A growing number of druggable targets and national initiatives for precision oncology
necessitate broad genomic profiling for many cancer patients. Whole exome sequencing …

[HTML][HTML] Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

R Yao, C Zhang, T Yu, N Li, X Hu, X Wang, J Wang… - Molecular …, 2017 - Springer
Background Whole exome sequencing (WES) has been widely accepted as a robust and
cost-effective approach for clinical genetic testing of small sequence variants. Detection of …

[HTML][HTML] Comparative study of whole exome sequencing-based copy number variation detection tools

L Zhao, H Liu, X Yuan, K Gao, J Duan - BMC bioinformatics, 2020 - Springer
Background With the rapid development of whole exome sequencing (WES), an increasing
number of tools are being proposed for copy number variation (CNV) detection based on …

[HTML][HTML] CNV detection from exome sequencing data in routine diagnostics of rare genetic disorders: opportunities and limitations

B Royer-Bertrand, K Cisarova, F Niel-Butschi… - Genes, 2021 - mdpi.com
To assess the potential of detecting copy number variations (CNVs) directly from exome
sequencing (ES) data in diagnostic settings, we developed a CNV-detection pipeline based …

[HTML][HTML] The landscape of genomic copy number alterations in colorectal cancer and their consequences on gene expression levels and disease outcome

T Ried, GA Meijer, DJ Harrison, G Grech… - Molecular aspects of …, 2019 - Elsevier
Aneuploidy, the unbalanced state of the chromosome content, represents a hallmark of most
solid tumors, including colorectal cancer. Such aneuploidies result in tumor specific genomic …

Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities

M Tetreault, E Bareke, J Nadaf, N Alirezaie… - Expert review of …, 2015 - Taylor & Francis
Whole-exome sequencing (WES) represents a significant breakthrough in the field of human
genetics. This technology has largely contributed to the identification of new disease …