[HTML][HTML] Detection of genomic structural variants from next-generation sequencing data
Structural variants are genomic rearrangements larger than 50 bp accounting for around 1%
of the variation among human genomes. They impact on phenotypic diversity and play a role …
of the variation among human genomes. They impact on phenotypic diversity and play a role …
Recent advances in epilepsy genetics
In last few years there has been rapid increase in the knowledge of epilepsy genetics.
Nowadays, it is estimated that genetic epilepsies include over than 30% of all epilepsy …
Nowadays, it is estimated that genetic epilepsies include over than 30% of all epilepsy …
Accurate detection of complex structural variations using single-molecule sequencing
Structural variations are the greatest source of genetic variation, but they remain poorly
understood because of technological limitations. Single-molecule long-read sequencing has …
understood because of technological limitations. Single-molecule long-read sequencing has …
Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants
We compared whole-exome sequencing (WES) and whole-genome sequencing (WGS) in
six unrelated individuals. In the regions targeted by WES capture (81.5% of the consensus …
six unrelated individuals. In the regions targeted by WES capture (81.5% of the consensus …
[HTML][HTML] Multicentric pilot study to standardize clinical whole exome sequencing (WES) for cancer patients
M Menzel, S Ossowski, S Kral, P Metzger… - NPJ Precision …, 2023 - nature.com
A growing number of druggable targets and national initiatives for precision oncology
necessitate broad genomic profiling for many cancer patients. Whole exome sequencing …
necessitate broad genomic profiling for many cancer patients. Whole exome sequencing …
[HTML][HTML] Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data
R Yao, C Zhang, T Yu, N Li, X Hu, X Wang, J Wang… - Molecular …, 2017 - Springer
Background Whole exome sequencing (WES) has been widely accepted as a robust and
cost-effective approach for clinical genetic testing of small sequence variants. Detection of …
cost-effective approach for clinical genetic testing of small sequence variants. Detection of …
[HTML][HTML] Comparative study of whole exome sequencing-based copy number variation detection tools
L Zhao, H Liu, X Yuan, K Gao, J Duan - BMC bioinformatics, 2020 - Springer
Background With the rapid development of whole exome sequencing (WES), an increasing
number of tools are being proposed for copy number variation (CNV) detection based on …
number of tools are being proposed for copy number variation (CNV) detection based on …
[HTML][HTML] CNV detection from exome sequencing data in routine diagnostics of rare genetic disorders: opportunities and limitations
B Royer-Bertrand, K Cisarova, F Niel-Butschi… - Genes, 2021 - mdpi.com
To assess the potential of detecting copy number variations (CNVs) directly from exome
sequencing (ES) data in diagnostic settings, we developed a CNV-detection pipeline based …
sequencing (ES) data in diagnostic settings, we developed a CNV-detection pipeline based …
[HTML][HTML] The landscape of genomic copy number alterations in colorectal cancer and their consequences on gene expression levels and disease outcome
Aneuploidy, the unbalanced state of the chromosome content, represents a hallmark of most
solid tumors, including colorectal cancer. Such aneuploidies result in tumor specific genomic …
solid tumors, including colorectal cancer. Such aneuploidies result in tumor specific genomic …
Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities
Whole-exome sequencing (WES) represents a significant breakthrough in the field of human
genetics. This technology has largely contributed to the identification of new disease …
genetics. This technology has largely contributed to the identification of new disease …