Polyproline-II helix in proteins: structure and function

AA Adzhubei, MJE Sternberg, AA Makarov - Journal of molecular biology, 2013 - Elsevier
The poly-l-proline type II (PPII) helix in recent years has emerged clearly as a structural class
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …

Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering

P Bernado, DI Svergun - Molecular biosystems, 2012 - pubs.rsc.org
Small-angle scattering of X-rays (SAXS) is an established method to study the overall
structure and structural transitions of biological macromolecules in solution. For folded …

Structure and energetics of the hydrogen-bonded backbone in protein folding

DW Bolen, GD Rose - Annu. Rev. Biochem., 2008 - annualreviews.org
We seek to understand the link between protein thermodynamics and protein structure in
molecular detail. A classical approach to this problem involves assessing changes in protein …

Atomic-level characterization of disordered protein ensembles

T Mittag, JD Forman-Kay - Current opinion in structural biology, 2007 - Elsevier
The roles of unfolded states of proteins in normal folding and in diseases involving
aggregation, as well as the prevalence and regulatory functions of intrinsically disordered …

[HTML][HTML] Proline and glycine control protein self-organization into elastomeric or amyloid fibrils

S Rauscher, S Baud, M Miao, FW Keeley, R Pomes - Structure, 2006 - cell.com
Elastin provides extensible tissues, including arteries and skin, with the propensity for elastic
recoil, whereas amyloid fibrils are associated with tissue-degenerative diseases, such as …

Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study

J Graf, PH Nguyen, G Stock… - Journal of the American …, 2007 - ACS Publications
The ϕ, ψ backbone angle distribution of small homopolymeric model peptides is
investigated by a joint molecular dynamics (MD) simulation and heteronuclear NMR study …

Small-angle X-ray scattering from RNA, proteins, and protein complexes

J Lipfert, S Doniach - Annu. Rev. Biophys. Biomol. Struct., 2007 - annualreviews.org
Small-angle X-ray scattering (SAXS) is increasingly used to characterize the structure and
interactions of biological macromolecules and their complexes in solution. Although still a …

[HTML][HTML] Predictive atomic resolution descriptions of intrinsically disordered hTau40 and α-synuclein in solution from NMR and small angle scattering

M Schwalbe, V Ozenne, S Bibow, M Jaremko… - Structure, 2014 - cell.com
The development of molecular descriptions of intrinsically disordered proteins (IDPs) is
essential for elucidating conformational transitions that characterize common …

[HTML][HTML] Evaluating the performance of the ff99SB force field based on NMR scalar coupling data

L Wickstrom, A Okur, C Simmerling - Biophysical journal, 2009 - cell.com
Force-field validation is essential for the identification of weaknesses in current models and
the development of more accurate models of biomolecules. NMR coupling and relaxation …

Conformation of the backbone in unfolded proteins

Z Shi, K Chen, Z Liu, NR Kallenbach - Chemical reviews, 2006 - ACS Publications
Despite its theoretical and practical importance, protein folding remains among the most
fundamental unsolved problems in the life sciences. The challenge of predicting folded …