Shaping immunity: The influence of natural selection on population immune diversity
Humans exhibit considerable variability in their immune responses to the same immune
challenges. Such variation is widespread and affects individual and population‐level …
challenges. Such variation is widespread and affects individual and population‐level …
Genetic and molecular architecture of complex traits
Human genetics has emerged as one of the most dynamic areas of biology, with a
broadening societal impact. In this review, we discuss recent achievements, ongoing efforts …
broadening societal impact. In this review, we discuss recent achievements, ongoing efforts …
Tracing the Evolution of Human Immunity Through Ancient DNA
E Patin, L Quintana-Murci - Annual Review of Immunology, 2024 - annualreviews.org
Infections have imposed strong selection pressures throughout human evolution, making the
study of natural selection's effects on immunity genes highly complementary to disease …
study of natural selection's effects on immunity genes highly complementary to disease …
[HTML][HTML] Transposable elements are associated with the variable response to influenza infection
Influenza A virus (IAV) infections are frequent every year and result in a range of disease
severity. Here, we wanted to explore the potential contribution of transposable elements …
severity. Here, we wanted to explore the potential contribution of transposable elements …
Genome graphs detect human polymorphisms in active epigenomic state during influenza infection
Genetic variants, including mobile element insertions (MEIs), are known to impact the
epigenome. We hypothesized that genome graphs, which encapsulate genetic diversity …
epigenome. We hypothesized that genome graphs, which encapsulate genetic diversity …
EpiVar Browser: advanced exploration of epigenomics data under controlled access
DR Lougheed, H Liu, KA Aracena, R Grégoire… - …, 2024 - academic.oup.com
Motivation Human epigenomic data has been generated by large consortia for thousands of
cell types to be used as a reference map of normal and disease chromatin states. Since …
cell types to be used as a reference map of normal and disease chromatin states. Since …
DNA methylation-environment interactions in the human genome
Previously, we showed that a massively parallel reporter assay, mSTARR-seq, could be
used to simultaneously test for both enhancer-like activity and DNA methylation-dependent …
used to simultaneously test for both enhancer-like activity and DNA methylation-dependent …
Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts
Only a third of immune-associated loci from genome-wide association studies (GWAS)
colocalize with expression quantitative trait loci (eQTLs). To learn about causal genes and …
colocalize with expression quantitative trait loci (eQTLs). To learn about causal genes and …
[HTML][HTML] Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk
Multi-ancestry statistical fine-mapping of cis-molecular quantitative trait loci (cis-molQTL)
aims to improve the precision of distinguishing causal cis-molQTLs from tagging variants …
aims to improve the precision of distinguishing causal cis-molQTLs from tagging variants …
Widespread gene-environment interactions shape the immune response to SARS-CoV-2 infection in hospitalized COVID-19 patients
HE Randolph, R Aguirre-Gamboa… - bioRxiv, 2024 - biorxiv.org
Genome-wide association studies performed in patients with coronavirus disease 2019
(COVID-19) have uncovered various loci significantly associated with susceptibility to SARS …
(COVID-19) have uncovered various loci significantly associated with susceptibility to SARS …