Comparative genomics
▪ Abstract The genomes from three mammals (human, mouse, and rat), two worms, and
several yeasts have been sequenced, and more genomes will be completed in the near …
several yeasts have been sequenced, and more genomes will be completed in the near …
Comparative analysis of insulin gene promoters: implications for diabetes research
CW Hay, K Docherty - Diabetes, 2006 - Am Diabetes Assoc
DNA sequences that regulate expression of the insulin gene are located within a region
spanning∼ 400 bp that flank the transcription start site. This region, the insulin promoter …
spanning∼ 400 bp that flank the transcription start site. This region, the insulin promoter …
Enhancer Hijacking Drives Oncogenic BCL11B Expression in Lineage-Ambiguous Stem Cell Leukemia
Lineage-ambiguous leukemias are high-risk malignancies of poorly understood genetic
basis. Here, we describe a distinct subgroup of acute leukemia with expression of myeloid, T …
basis. Here, we describe a distinct subgroup of acute leukemia with expression of myeloid, T …
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel, G Bejerano, JS Pedersen… - Genome …, 2005 - genome.cshlp.org
We have conducted a comprehensive search for conserved elements in vertebrate
genomes, using genome-wide multiple alignments of five vertebrate species (human …
genomes, using genome-wide multiple alignments of five vertebrate species (human …
Galaxy: a platform for interactive large-scale genome analysis
B Giardine, C Riemer, RC Hardison, R Burhans… - Genome …, 2005 - genome.cshlp.org
Accessing and analyzing the exponentially expanding genomic sequence and functional
data pose a challenge for biomedical researchers. Here we describe an interactive system …
data pose a challenge for biomedical researchers. Here we describe an interactive system …
The genome of a songbird
The zebra finch is an important model organism in several fields, with unique relevance to
human neuroscience,. Like other songbirds, the zebra finch communicates through learned …
human neuroscience,. Like other songbirds, the zebra finch communicates through learned …
Genomic deletion of a long-range bone enhancer misregulates sclerostin in Van Buchem disease
GG Loots, M Kneissel, H Keller, M Baptist… - Genome …, 2005 - genome.cshlp.org
Mutations in distant regulatory elements can have a negative impact on human development
and health, yet because of the difficulty of detecting these critical sequences, we …
and health, yet because of the difficulty of detecting these critical sequences, we …
Ultra‐barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
• Premise of study: To reliably identify lineages below the species level such as subspecies
or varieties, we propose an extension to DNA‐barcoding using next‐generation sequencing …
or varieties, we propose an extension to DNA‐barcoding using next‐generation sequencing …
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
I Ovcharenko, MA Nobrega, GG Loots… - Nucleic acids …, 2004 - academic.oup.com
With an increasing number of vertebrate genomes being sequenced in draft or finished form,
unique opportunities for decoding the language of DNA sequence through comparative …
unique opportunities for decoding the language of DNA sequence through comparative …
MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis
Disruption of signaling pathways such as those mediated by sonic hedgehog (Shh) or
platelet-derived growth factor (Pdgf) causes craniofacial abnormalities, including cleft palate …
platelet-derived growth factor (Pdgf) causes craniofacial abnormalities, including cleft palate …