[HTML][HTML] Microbial transformations of human bile acids

DV Guzior, RA Quinn - Microbiome, 2021 - Springer
Bile acids play key roles in gut metabolism, cell signaling, and microbiome composition.
While the liver is responsible for the production of primary bile acids, microbes in the gut …

Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …

[HTML][HTML] TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …

[HTML][HTML] Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …

Roles of the microbiota of the female reproductive tract in gynecological and reproductive health

B Zhu, Z Tao, L Edupuganti, MG Serrano… - … and Molecular Biology …, 2022 - Am Soc Microbiol
The microbiome of the female reproductive tract defies the convention that high biodiversity
is a hallmark of an optimal ecosystem. Although not universally true, a homogeneous …

[HTML][HTML] Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …

[HTML][HTML] Plant growth promoting actinobacteria, the most promising candidates as bioinoculants?

ZF Boukhatem, C Merabet, H Tsaki - Frontiers in Agronomy, 2022 - frontiersin.org
Plant Growth Promoting Bacteria (PGPBs) are a strong ally for sustainable agriculture. They
offer an interesting alternative to chemical fertilizers and pesticides. Many microorganisms …

[HTML][HTML] Serial anaerobic digestion improves protein degradation and biogas production from mixed food waste

E Perman, A Schnürer, A Björn, J Moestedt - Biomass and bioenergy, 2022 - Elsevier
Optimization of the biogas generation process is important to achieve efficient degradation
and high methane yield, and to reduce methane emissions from the digestate. In this study …

Actinobacteria-enhanced plant growth, nutrient acquisition, and crop protection: Advances in soil, plant, and microbial multifactorial interactions

D Mitra, R Mondal, B Khoshru, A Senapati, TK Radha… - Pedosphere, 2022 - Elsevier
Agricultural areas of land are deteriorating every day owing to population increase, rapid
urbanization, and industrialization. To feed today's huge populations, increased crop …