[HTML][HTML] Microbial transformations of human bile acids
Bile acids play key roles in gut metabolism, cell signaling, and microbiome composition.
While the liver is responsible for the production of primary bile acids, microbes in the gut …
While the liver is responsible for the production of primary bile acids, microbes in the gut …
Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory
DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …
an ever increasing number of taxon names and associated sequences in public data …
[HTML][HTML] TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
[HTML][HTML] Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …
bacteria that includes organisms of varying morphologies, physiologies and habitat …
Roles of the microbiota of the female reproductive tract in gynecological and reproductive health
B Zhu, Z Tao, L Edupuganti, MG Serrano… - … and Molecular Biology …, 2022 - Am Soc Microbiol
The microbiome of the female reproductive tract defies the convention that high biodiversity
is a hallmark of an optimal ecosystem. Although not universally true, a homogeneous …
is a hallmark of an optimal ecosystem. Although not universally true, a homogeneous …
[HTML][HTML] Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
[HTML][HTML] Plant growth promoting actinobacteria, the most promising candidates as bioinoculants?
Plant Growth Promoting Bacteria (PGPBs) are a strong ally for sustainable agriculture. They
offer an interesting alternative to chemical fertilizers and pesticides. Many microorganisms …
offer an interesting alternative to chemical fertilizers and pesticides. Many microorganisms …
[HTML][HTML] Serial anaerobic digestion improves protein degradation and biogas production from mixed food waste
E Perman, A Schnürer, A Björn, J Moestedt - Biomass and bioenergy, 2022 - Elsevier
Optimization of the biogas generation process is important to achieve efficient degradation
and high methane yield, and to reduce methane emissions from the digestate. In this study …
and high methane yield, and to reduce methane emissions from the digestate. In this study …
Actinobacteria-enhanced plant growth, nutrient acquisition, and crop protection: Advances in soil, plant, and microbial multifactorial interactions
Agricultural areas of land are deteriorating every day owing to population increase, rapid
urbanization, and industrialization. To feed today's huge populations, increased crop …
urbanization, and industrialization. To feed today's huge populations, increased crop …