Pick one, but be quick: 5′ splice sites and the problems of too many choices

X Roca, AR Krainer, IC Eperon - Genes & development, 2013 - genesdev.cshlp.org
Splice site selection is fundamental to pre-mRNA splicing and the expansion of genomic
coding potential. 5′ Splice sites (5′ ss) are the critical elements at the 5′ end of introns …

Post-translational control of RNA-binding proteins and disease-related dysregulation

A Velázquez-Cruz, B Baños-Jaime… - Frontiers in molecular …, 2021 - frontiersin.org
Cell signaling mechanisms modulate gene expression in response to internal and external
stimuli. Cellular adaptation requires a precise and coordinated regulation of the transcription …

GraphProt: modeling binding preferences of RNA-binding proteins

D Maticzka, SJ Lange, F Costa, R Backofen - Genome biology, 2014 - Springer
We present GraphProt, a computational framework for learning sequence-and structure-
binding preferences of RNA-binding proteins (RBPs) from high-throughput experimental …

Linking hnRNP function to ALS and FTD pathology

MD Purice, JP Taylor - Frontiers in neuroscience, 2018 - frontiersin.org
Following years of rapid progress identifying the genetic underpinnings of amyotrophic
lateral sclerosis (ALS) and related diseases such as frontotemporal dementia (FTD) …

CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing

X Li, S Liu, J Jiang, L Zhang, S Espinosa… - Nature …, 2017 - nature.com
U1 snRNP plays a critical role in 5ʹ-splice site recognition and is a frequent target of
alternative splicing factors. These factors transiently associate with human U1 snRNP and …

Tandem RNA binding sites induce self-association of the stress granule marker protein TIA-1

FE Loughlin, DL West, MJ Gunzburg… - Nucleic acids …, 2021 - academic.oup.com
TIA-1 is an RNA-binding protein that sequesters target RNA into stress granules under
conditions of cellular stress. Promotion of stress granule formation by TIA-1 depends upon …

KSHV inhibits stress granule formation by viral ORF57 blocking PKR activation

NR Sharma, V Majerciak, MJ Kruhlak… - PLoS …, 2017 - journals.plos.org
TIA-1 positive stress granules (SG) represent the storage sites of stalled mRNAs and are
often associated with the cellular antiviral response. In this report, we provide evidence that …

Welander Distal Myopathy Caused by an Ancient Founder Mutation in TIA1 Associated with Perturbed Splicing

J Klar, M Sobol, A Melberg, K Mäbert, A Ameur… - Human …, 2013 - Wiley Online Library
ABSTRACT W elander distal myopathy (WDM) is an adult onset autosomal dominant
disorder characterized by distal limb weakness, which progresses slowly from the fifth …

[HTML][HTML] RNA recognition and stress granule formation by TIA proteins

S Waris, MCJ Wilce, JA Wilce - International Journal of Molecular …, 2014 - mdpi.com
Stress granule (SG) formation is a primary mechanism through which gene expression is
rapidly modulated when the eukaryotic cell undergoes cellular stresses (including heat …

A structure-free method for quantifying conformational flexibility in proteins

VM Burger, DJ Arenas, CM Stultz - Scientific reports, 2016 - nature.com
All proteins sample a range of conformations at physiologic temperatures and this inherent
flexibility enables them to carry out their prescribed functions. A comprehensive …