[HTML][HTML] WormBase ParaSite− a comprehensive resource for helminth genomics

KL Howe, BJ Bolt, M Shafie, P Kersey… - Molecular and …, 2017 - Elsevier
The number of publicly available parasitic worm genome sequences has increased
dramatically in the past three years, and research interest in helminth functional genomics is …

Clinical decision support systems for improving diagnostic accuracy and achieving precision medicine

C Castaneda, K Nalley, C Mannion… - Journal of clinical …, 2015 - Springer
As research laboratories and clinics collaborate to achieve precision medicine, both
communities are required to understand mandated electronic health/medical record …

Live-seq enables temporal transcriptomic recording of single cells

W Chen, O Guillaume-Gentil, PY Rainer, CG Gäbelein… - Nature, 2022 - nature.com
Single-cell transcriptomics (scRNA-seq) has greatly advanced our ability to characterize
cellular heterogeneity. However, scRNA-seq requires lysing cells, which impedes further …

Evolutionary constraint and innovation across hundreds of placental mammals

MJ Christmas, IM Kaplow, DP Genereux, MX Dong… - Science, 2023 - science.org
Zoonomia is the largest comparative genomics resource for mammals produced to date. By
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …

Phenotypic plasticity and genetic control in colorectal cancer evolution

J Househam, T Heide, GD Cresswell, I Spiteri… - Nature, 2022 - nature.com
Genetic and epigenetic variation, together with transcriptional plasticity, contribute to
intratumour heterogeneity. The interplay of these biological processes and their respective …

The BioMart community portal: an innovative alternative to large, centralized data repositories

D Smedley, S Haider, S Durinck, L Pandini… - Nucleic acids …, 2015 - academic.oup.com
Abstract The BioMart Community Portal (www. biomart. org) is a community-driven effort to
provide a unified interface to biomedical databases that are distributed worldwide. The …

DT-109 ameliorates nonalcoholic steatohepatitis in nonhuman primates

P Qu, O Rom, K Li, L Jia, X Gao, Z Liu, S Ding, M Zhao… - Cell metabolism, 2023 - cell.com
Nonalcoholic steatohepatitis (NASH) prevalence is rising with no pharmacotherapy
approved. A major hurdle in NASH drug development is the poor translatability of preclinical …

Ensembl 2014

P Flicek, MR Amode, D Barrell, K Beal… - Nucleic acids …, 2014 - academic.oup.com
Abstract Ensembl (http://www. ensembl. org) creates tools and data resources to facilitate
genomic analysis in chordate species with an emphasis on human, major vertebrate model …

LXR signaling controls homeostatic dendritic cell maturation

V Bosteels, S Maréchal, C De Nolf, S Rennen… - Science …, 2023 - science.org
Dendritic cells (DCs) mature in an immunogenic or tolerogenic manner depending on the
context in which an antigen is perceived, preserving the balance between immunity and …

Human 5′ UTR design and variant effect prediction from a massively parallel translation assay

PJ Sample, B Wang, DW Reid, V Presnyak… - Nature …, 2019 - nature.com
The ability to predict the impact of cis-regulatory sequences on gene expression would
facilitate discovery in fundamental and applied biology. Here we combine polysome profiling …