Cleavable molecular beacon-based loop-mediated isothermal amplification assay for the detection of adulterated chicken in meat

S Yan, H Lan, Z Wu, Y Sun, M Tu, D Pan - Analytical and Bioanalytical …, 2022 - Springer
A simple, sensitive, specific and fast method based on the loop-mediated isothermal
amplification (LAMP) technique and cleavable molecular beacon (CMB) was developed for …

Adaptive filtering framework to remove nonspecific and low-efficiency reactions in multiplex digital PCR based on sigmoidal trends

L Miglietta, K Xu, P Chhaya, L Kreitmann… - Analytical …, 2022 - ACS Publications
Real-time digital polymerase chain reaction (qdPCR) coupled with machine learning (ML)
methods has shown the potential to unlock scientific breakthroughs, particularly in the field …

A round‐robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels

AJ Sepulveda, PR Hutchins, C Jackson… - Environmental …, 2020 - Wiley Online Library
Resource managers may be hesitant to make decisions based on environmental (e) DNA
results alone since eDNA is an indirect method of species detection. One way to reduce the …

Prolonged Linear Amplification of qPCR for the Correction of Amplification Variation and the Absolute Quantification without Standard Curves

X Jiang, BB Xie, K Li, F Zhou - Analytical Chemistry, 2023 - ACS Publications
The variable amplification efficiency of each thermal cycle of qPCR obeys the Poisson
distribution, and the qPCR system dynamically changes, so there must be a detection error …

A Novel Approach for Modeling Biphasic Dose–Response Curves

YCM Hsieh, L Chang, AM Barron - Statistics in Biopharmaceutical …, 2023 - Taylor & Francis
Estimates of EC 50 from dose–response data play an important role in comparing drug
potencies. When the sampling data of dose–response studies fail to follow a sigmoidal …

[HTML][HTML] qPCR data analysis: Better results through iconoclasm

J Tellinghuisen, AN Spiess - Biomolecular detection and quantification, 2019 - Elsevier
The standard approach for quantitative estimation of genetic materials with qPCR is
calibration with known concentrations for the target substance, in which estimates of the …

LoopTag FRET Probe System for Multiplex qPCR Detection of Borrelia Species

H Hanschmann, S Rödiger, T Kramer, K Hanschmann… - Life, 2021 - mdpi.com
Background: Laboratory diagnosis of Lyme borreliosis refers to some methods with known
limitations. Molecular diagnostics using specific nucleic acid probes may overcome some of …

From primers to pipettes: An immersive course introducing high school students to qPCR for quantifying chemical defense gene expression

ZT Spooner, AM Encerrado‐Manriquez… - Biochemistry and …, 2024 - Wiley Online Library
We created a 2‐week, dual‐module summer course introducing high school students to
environmental toxicology by teaching them quantitative polymerase chain reaction (qPCR) …

[PDF][PDF] PCRedux: A Quantitative PCR Machine Learning Toolkit

M Burdukiewicz, AN Spiess, D Rafacz… - Journal of Open …, 2022 - joss.theoj.org
Conclusion Manual classification of ACs is time-consuming and error-prone, especially with
large data sets where a significant proportion of curves deviate from sigmoidal shape, and …

Are the results from a multiplex proteomic assay and a conventional immunoassay for NT-proBNP and GDF-15 comparable?

E Skau, P Wagner, J Leppert, J Ärnlöv, P Hedberg - Clinical Proteomics, 2023 - Springer
Background We aimed to compare absolute plasma concentrations of N-terminal pro-brain
natriuretic peptide (NT-proBNP) and growth differentiation factor 15 (GDF-15) obtained by a …