In silico subtractive genomics for target identification in human bacterial pathogens

D Barh, S Tiwari, N Jain, A Ali… - Drug Development …, 2011 - Wiley Online Library
Target identification is the first step in the drug and vaccine discovery process; in silico
subtractive genomics is widely used in this process. Using this approach, in recent years, a …

[PDF][PDF] Immunogenicity prediction by VaxiJen: a ten year overview

N Zaharieva, I Dimitrov, D Flower… - J. Proteom …, 2017 - ddg-pharmfac.net
Vaccination stands alone as an unparalleled medical intervention able to save human lives
numbering hundreds of millions. Modern licensed vaccines are either whole organism …

Identification of potential drug targets by subtractive genome analysis of Escherichia coli O157:H7: an in silico approach

SI Mondal, S Ferdous, NA Jewel, A Akter… - … and applications in …, 2015 - Taylor & Francis
Bacterial enteric infections resulting in diarrhea, dysentery, or enteric fever constitute a huge
public health problem, with more than a billion episodes of disease annually in developing …

Identification and Characterization of Potential Therapeutic Candidates in Emerging Human Pathogen Mycobacterium abscessus: A Novel Hierarchical In Silico …

B Shanmugham, A Pan - PloS one, 2013 - journals.plos.org
Mycobacterium abscessus, a non-tuberculous rapidly growing mycobacterium, is
recognized as an emerging human pathogen causing a variety of infections ranging from …

Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny

W Wei, LW Ning, YN Ye, FB Guo - PloS one, 2013 - journals.plos.org
Integrative genomics predictors, which score highly in predicting bacterial essential genes,
would be unfeasible in most species because the data sources are limited. We developed a …

In silico identification of common putative drug targets in Leptospira interrogans

U Amineni, D Pradhan, H Marisetty - Journal of chemical biology, 2010 - Springer
Infectious diseases are the leading causes of death worldwide. Hence, there is a need to
develop new antimicrobial agents. Traditional method of drug discovery is time consuming …

Subtractive Genomics Approach for Identification of Novel Therapeutic Drug Targets in Mycoplasma genitalium

AJ Fatoba, M Okpeku, MA Adeleke - Pathogens, 2021 - mdpi.com
Mycoplasma genitalium infection is a sexually transmitted infection that causes urethritis,
cervicitis, and pelvic inflammatory disease (PID) in men and women. The global rise in …

Comparative Genomics Analysis of Mycobacterium ulcerans for the Identification of Putative Essential Genes and Therapeutic Candidates

AM Butt, I Nasrullah, S Tahir, Y Tong - 2012 - journals.plos.org
Mycobacterium ulcerans, the causative agent of Buruli ulcer, is the third most common
mycobacterial disease after tuberculosis and leprosy. The present treatment options are …

Computational approaches to predicting essential proteins: a survey

J Wang, W Peng, FX Wu - PROTEOMICS–Clinical Applications, 2013 - Wiley Online Library
Essential proteins are indispensable to support cellular life. Identifying essential proteins
can help us understand the minimal requirements for cell survival, which plays a significant …

An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach

A Kumar Jaiswal, S Tiwari, SB Jamal, D Barh… - International journal of …, 2017 - mdpi.com
Sexually transmitted infections (STIs) are caused by a wide variety of bacteria, viruses, and
parasites that are transmitted from one person to another primarily by vaginal, anal, or oral …