A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
Mining genomes to illuminate the specialized chemistry of life
All organisms produce specialized organic molecules, ranging from small volatile chemicals
to large gene-encoded peptides, that have evolved to provide them with diverse cellular and …
to large gene-encoded peptides, that have evolved to provide them with diverse cellular and …
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
K Blin, S Shaw, K Steinke, R Villebro… - Nucleic acids …, 2019 - academic.oup.com
Secondary metabolites produced by bacteria and fungi are an important source of
antimicrobials and other bioactive compounds. In recent years, genome mining has seen …
antimicrobials and other bioactive compounds. In recent years, genome mining has seen …
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
SA Kautsar, K Blin, S Shaw… - Nucleic acids …, 2020 - academic.oup.com
Fueled by the explosion of (meta) genomic data, genome mining of specialized metabolites
has become a major technology for drug discovery and studying microbiome ecology. In …
has become a major technology for drug discovery and studying microbiome ecology. In …
BiG-FAM: the biosynthetic gene cluster families database
Computational analysis of biosynthetic gene clusters (BGCs) has revolutionized natural
product discovery by enabling the rapid investigation of secondary metabolic potential within …
product discovery by enabling the rapid investigation of secondary metabolic potential within …
Bioinformatic prospecting and synthesis of a bifunctional lipopeptide antibiotic that evades resistance
Emerging resistance to currently used antibiotics is a global public health crisis. Because
most of the biosynthetic capacity within the bacterial kingdom has remained silent in …
most of the biosynthetic capacity within the bacterial kingdom has remained silent in …
Evolution and diversity of assembly-line polyketide synthases: Focus review
Assembly-line polyketide synthases (PKSs) are among the most complex protein
machineries known in nature, responsible for the biosynthesis of numerous compounds …
machineries known in nature, responsible for the biosynthesis of numerous compounds …
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes
Microorganisms produce natural products that are frequently used in the development of
antibacterial, antiviral, and anticancer drugs, pesticides, herbicides, or fungicides. In recent …
antibacterial, antiviral, and anticancer drugs, pesticides, herbicides, or fungicides. In recent …
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
Background Genome mining for biosynthetic gene clusters (BGCs) has become an integral
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
Engineering living and regenerative fungal–bacterial biocomposite structures
RM McBee, M Lucht, N Mukhitov, M Richardson… - Nature Materials, 2022 - nature.com
Engineered living materials could have the capacity to self-repair and self-replicate, sense
local and distant disturbances in their environment, and respond with functionalities for …
local and distant disturbances in their environment, and respond with functionalities for …