Expanding the chemical toolbox for the synthesis of large and uniquely modified proteins

S Bondalapati, M Jbara, A Brik - Nature chemistry, 2016 - nature.com
Methods to prepare proteins that include a specific modification at a desired position are
essential for understanding their cellular functions and physical properties in living systems …

Genetic Code Expansion Approaches to Decipher the Ubiquitin Code

V Wanka, M Fottner, M Cigler, K Lang - Chemical Reviews, 2024 - ACS Publications
The covalent attachment of Ub (ubiquitin) to target proteins (ubiquitylation) represents one of
the most versatile PTMs (post-translational modifications) in eukaryotic cells. Substrate …

Chemical synthesis of activity‐based E2‐ubiquitin probes for the structural analysis of E3 ligase‐catalyzed transthiolation

LJ Liang, GC Chu, Q Qu, C Zuo, J Mao… - Angewandte Chemie …, 2021 - Wiley Online Library
Activity‐based E2 conjugating enzyme (E2)‐ubiquitin (Ub) probes have recently emerged as
effective tools for studying the molecular mechanism of E3 ligase (E3)‐catalyzed …

Why structure and chain length matter: on the biological significance underlying the structural heterogeneity of poly (ADP-ribose)

JM Reber, A Mangerich - Nucleic Acids Research, 2021 - academic.oup.com
Abstract Poly (ADP-ribosyl) ation (PARylation) is a multifaceted post-translational
modification, carried out by poly (ADP-ribosyl) transferases (poly-ARTs, PARPs), which play …

Neutron-encoded diubiquitins to profile linkage selectivity of deubiquitinating enzymes

BDM van Tol, BR van Doodewaerd… - Nature …, 2023 - nature.com
Deubiquitinating enzymes are key regulators in the ubiquitin system and an emerging class
of drug targets. These proteases disassemble polyubiquitin chains and many …

Practical chemical synthesis of atypical ubiquitin chains by using an isopeptide‐linked Ub isomer

S Tang, LJ Liang, YY Si, S Gao, JX Wang… - Angewandte …, 2017 - Wiley Online Library
Chemical ubiquitination is an effective approach for accessing structurally defined, atypical
ubiquitin (Ub) chains that are difficult to prepare by other techniques. Herein, we describe a …

Synthetic polyubiquitinated α-Synuclein reveals important insights into the roles of the ubiquitin chain in regulating its pathophysiology

M Haj-Yahya, B Fauvet… - Proceedings of the …, 2013 - National Acad Sciences
Ubiquitination regulates, via different modes of modifications, a variety of biological
processes, and aberrations in the process have been implicated in the pathogenesis of …

The journey for the total chemical synthesis of a 53 kDa protein

H Sun, A Brik - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Chemical protein synthesis has been proved as an efficient way to afford
medium-sized proteins with high homogeneity in workable quantities for various …

Exploring chemoselective S-to-N acyl transfer reactions in synthesis and chemical biology

HM Burke, L McSweeney, EM Scanlan - Nature communications, 2017 - nature.com
S-to-N acyl transfer is a high-yielding chemoselective process for amide bond formation. It is
widely utilized by chemists for synthetic applications, including peptide and protein …

De novo macrocyclic peptides that specifically modulate Lys48-linked ubiquitin chains

M Nawatha, JM Rogers, SM Bonn, I Livneh… - Nature …, 2019 - nature.com
A promising approach in cancer therapy is to find ligands that directly bind ubiquitin (Ub)
chains. However, finding molecules capable of tightly and specifically binding Ub chains is …