EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison

SIA Alves, VBC Ferreira, CWD Dantas, ALC Silva… - Frontiers in …, 2023 - frontiersin.org
Microsatellites, also known as SSRs or STRs, are polymorphic DNA regions with tandem
repetitions of a nucleotide motif of size 1–6 base pairs with a broad range of applications in …

Systems biology of the genomes' microsatellite signature of Orthopoxvirus including the Monkeypox virus

T Nasrin, M Hoque, S Ali - Comparative Immunology, Microbiology and …, 2023 - Elsevier
This study is an attempt to extract and analyse the microsatellites or simple sequence
repeats (SSRs) from the genomes of eight species of the genus Orthopoxvirus. The average …

Microsatellite diversity and complexity in the viral genomes of the family Caliciviridae

MG Jilani, M Hoque, S Ali - Journal of Genetic Engineering and …, 2023 - Springer
Background Microsatellites or simple sequence repeats (SSR) consist of 1–6 nucleotide
motifs of DNA or RNA which are ubiquitously present in tandem repeated sequences across …

[HTML][HTML] Genome Microsatellite Signature Analysis in Adenoviridae family of Viruses

MA Islam, MG Jilani, M Hoque, S Ali - The Microbe, 2024 - Elsevier
Simple sequence repeats (SSRs) are present across both coding & non-coding regions of
the genomes of all organisms with diversity in incidence, complexity, and repetition. The …