Shaping ethylene response: the role of EIN3/EIL1 transcription factors

VA Dolgikh, EM Pukhovaya… - Frontiers in Plant …, 2019 - frontiersin.org
EIN3/EIL1 transcription factors are the key regulators of ethylene signaling that sustain a
variety of plant responses to ethylene. Since ethylene regulates multiple aspects of plant …

Transcriptional events defining plant immune responses

RP Birkenbihl, S Liu, IE Somssich - Current opinion in plant biology, 2017 - Elsevier
Highlights•Newly identified transcriptional regulators of immunity.•Interactions between
transcriptional regulators and with their target genes.•The effect of phytohormones in …

Mapping genome-wide transcription-factor binding sites using DAP-seq

A Bartlett, RC O'Malley, SC Huang, M Galli, JR Nery… - Nature protocols, 2017 - nature.com
To enable low-cost, high-throughput generation of cistrome and epicistrome maps for any
organism, we developed DNA affinity purification sequencing (DAP-seq), a transcription …

Jasmonic acid as a mediator in plant response to necrotrophic fungi

VK Macioszek, T Jęcz, I Ciereszko, AK Kononowicz - Cells, 2023 - mdpi.com
Jasmonic acid (JA) and its derivatives, all named jasmonates, are the simplest
phytohormones which regulate multifarious plant physiological processes including …

Nitrate in 2020: thirty years from transport to signaling networks

EA Vidal, JM Alvarez, V Araus, E Riveras… - The Plant …, 2020 - academic.oup.com
Nitrogen (N) is an essential macronutrient for plants and a major limiting factor for plant
growth and crop production. Nitrate is the main source of N available to plants in agricultural …

Visualizing and manipulating biological processes by using HaloTag and SNAP‐tag technologies

CA Hoelzel, X Zhang - ChemBioChem, 2020 - Wiley Online Library
Visualizing and manipulating the behavior of proteins is crucial to understanding the
physiology of the cell. Methods of biorthogonal protein labeling are important tools to attain …

The quest for transcriptional hubs of lignin biosynthesis: beyond the NAC-MYB-gene regulatory network model

M Ohtani, T Demura - Current opinion in biotechnology, 2019 - Elsevier
Highlights•The NAC-MYB-GRN model describes developmental lignin biosynthesis.•This
model is valid for all land plants.•Molecular hubs linking lignification with adaptation should …

Exploring the protein–protein interaction landscape in plants

S Struk, A Jacobs… - Plant, cell & …, 2019 - Wiley Online Library
Protein–protein interactions (PPIs) represent an essential aspect of plant systems biology.
Identification of key protein players and their interaction networks provide crucial insights …

Building transcription factor binding site models to understand gene regulation in plants

X Lai, A Stigliani, G Vachon, C Carles, C Smaczniak… - Molecular plant, 2019 - cell.com
Transcription factors (TFs) are key cellular components that control gene expression. They
recognize specific DNA sequences, the TF binding sites (TFBSs), and thus are targeted to …

Hub protein controversy: taking a closer look at plant stress response hubs

K Vandereyken, J Van Leene, B De Coninck… - Frontiers in plant …, 2018 - frontiersin.org
Plant stress responses involve numerous changes at the molecular and cellular level and
are regulated by highly complex signaling pathways. Studying protein-protein interactions …